RnoINT0144171 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174144381-174148164:-
Coord C1 exon
chr1:174148024-174148164
Coord A exon
chr1:174144530-174148023
Coord C2 exon
chr1:174144381-174144529
Length
3494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGCCTTGACTTCCCTACAGGTG
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTCCTAGATGAGGTGGAGCGCCGGCGTGGAATCTCAGCTGCTCTGGTCTACCCCTTTATGAGAAGTCTCATGGAATCGCCCTTTCCAGCCCCAGGGAAAACCATCAAAGTGAAGACATTCCTGCCTGGTGCTGGCAATGAG
Seq A exon
GTAGGGAATTGCTACAGTGTTCATTTCTGGCCCTAGGCTGGGTCTAGAGAAGAGCGTGCCTGCCAGAGTGCCGTCCCTGGGAGGTGTAGAACACTTTCCTGCTCACTGTGTCTGTACTCCTGGTCAGTATGAACAACAGTGTGACCCTGGGAGCTGTACGTGTTGTCCAATTGTCTTCTGCTAGGGACTTTGGCTGACTTGTACCCTGGATTAGTATTGATTATGAGCATTCACAACTGGAGGTTTTACCAAACCTTGGGTACAGTCATGAAGATAAAGACTGTCACAGTGTCCTCCAGGACTGTCATATCTAGAAGGGGACCTGCTGTTGAATAGTTATATTTATAAATAGTTGATTCCCAAGTGTCTGTAAAAAGAAAGAACAGGATCCTATGAGAATGTAGAACAGGGGGGTCTATTTTAGTTTAGGGGGCCAGAGAAAGCCTTCTGCCAAGAAAAGGCCATTTTTCTAGGGGCCTCAGCAATGCATAGGAGAGAGAGCTGGAGGGAGATTATTATTGCAAGTGTGGGAACAACAGGTATAGGGCAGGAGCGAGAGCAGGGCAGGTGCTGTGCAAGCACTTGAAACAGATCAAGATGCCTAGAGGGTGTGAATAGACATGGTGGGCAAGCAAGGACCCAAGCTCAGTGTTTGTGCCTGCACACACTTAACAGTGCTAAGAATTTGGGGTTTTAGCCAAAAGAGGATTAAGATTCACTCTGCTGTAAATCTTGTGTGCAGACTGTTGTGCAGAGAATGGGCAGGAGTGTAAACGGAGACAGCAAGACAATTGCAGTAACACAGGCAGGAGATAGGAGCTGGGCTAGAGTATGGTAGGGAAAATGAATAGAAATAGATGGATTTGAAGCAGTAACACTTGGAGTTTTCCTGGAGGTAGAAAGCATGACCACGATTCTTAAGTCCAACCTACAGCTTTCTGTCCTAGGGAAGAGGGTGGATAACGGAGCCATATCTGACTATGGGAGCCTATAAAGGATAAGAAGGAGAGAATGTCTTGTCACTTAAGTCTAGGTGGGAACCAAGTGTATAGACAGGGACAAAGTGAAAGCCCAGTTCTGAGGAACCCTCAAGTAGAGCGGTAGCAACTCTGAAGTTGGAAGACAAGAAATAAGGAGAGCGGGGTTAGGGATTTAGCTCAGTGGTAGGGCGCTTGCCTAGCAAGCGCAAGACCCTGGGTTCGGTCCCCACCTCCGAAAAAAAAAAGAAAAAGAAAAACAACAACAAAAGAAAGAAACAAGGAGAGGAAGTGGCTGAGAAGCTAAAGAAAGGGAGCCCCAGTGAATAAGGAGTAAGTAATATCCCAGTCAGGTACCACCGAGGTGCAGCAAGGGCCATTGACAAGGAACGGACTTCAGGTGGAGCCCAGTGGCAGCTGGGTGAGTGGAGAAGTGAGGGATGAGACAGCTCATGTAGACAGCTCCTCTGGGGTGTGGCATTGAAGAGAACAAGGAGGTGGATGGAGGGAAGAGTGAGTATGGAGCTGATGGAGGCCAGGGTAAGGGGTAGGAAGGTGTTATTGAAGATGGCTGTTTGCATGCTGATGGATTGGCCCTGGGCAAAGACATTGGCAATGCAGAAGAAGGAAGGACAACCCGCTGTCACCAGAAGGTGCAGGCAGTGGTCTCTATGGACGCTGTCTTCTGTTAGGAGAGGAGGGGAAAGATGGTAGCTTGTAGACTTGGATTCTCACGAGATGGCTTTGGTTTCCTCAGAGTAGAAAAGCAGAGGGCATCTTAGAGTAAGAGGTGGGAAGATGAAAACTGCTGCTGATGGGAGGACTGACCTCGGAGTCACAGAAGTGTGCAGGCAGTGACATGCCGGCTGGGTCTCAGGAAGACATCTTCCTGAGAGTCTCTACATATCCTAGGATAAGAGAGACTTTTGAGTTTCGTGAGTTGTCTGGGGCAGGAGAGCTGACCCTGCCTTGAAGCCCAGGGCTTACCCTGGAGTTCTTCAGTTCTACTCTTCCTAGTCACTTCCTAAGCCTGGTTGCTTCTCTCTGACTAGGGCTATTTCCTGTCCCCTGAGTCCTCTTGTTTTGGCCTTAAAGGCATTTCCTCCTTCTTATGGACTCCAAGTCACTCATGCTGTAAGACACCTCAAACTCTCAGAAACTTCCCAGGAGTGGGCAGGTGCCAGCTTCCCTTCCTAGATGCACTCCCTACTGCTGTCCATGGGCTGTCCCACTAGGTTGCTGTCTGATTCCCAGCCCCTAGAGGCAGGGGCAGCGTGGGGCTGGGGGTTAGAGGCTGGAAGTTAGAGAGTAGCACTTACTGGGGCTACTTGCAGGGCTCTCGGGAGGCAGGGCTAGCATTTTGTTTTCTCTTGTTTTAGGATGGGGACAGGTATTAGGCAGGATACAAGGGTTCTGACATAACTGCAATGGCATGCCTTCAGCCCACACCCATCAAGCACTTAGGGGTTCCCCTTCATTGTGCTGATCACTAGCTCTTCCTGGGGTTCACTACCTGTCAAGAAAGAGTACACACAGCTCTTGCAGTCCCCTTCATCCCTGTTGATGTTTTTCAGAACCCAGGGTGGTGAATACTGAGCTAAGAATTCCTTCACTTGCAAAAGCAAACAGTGCTTAGGGGACTGGAAGTCACCCAAGTCAGAGATGAGAAATGAACTCTCTAAGTAACTGGAGCAGATCTGAAGCAAGAACAGTGAGACACCTGGGGCAAGCCCCTCGCTGGGGATTCGCTATGACACAAGGCCATACAGGATAGTTTCCTACCTCAGGTTCTTGGGAAGCCTGCGTATCTATCACTGCTGCTGTACAGATGATGAGTTAGCAGTTCCTGTCACTGCGGAGGTCATCTGCAGCCCCTTTCTCCAGCCCCTCACACCCATGCCTCCAGGAAGGGGCTTTGGGTGCCATTAGGCAGACCTCTGAATAGTTCCTAGAGGAGAATACAGGTAGGCCTGGCTTCATAAAGACAGTCCTGTGTCCTTGCAAGATTTTTGGAATCGCCAGATCTTTCCTAATCCTTAGCACGGGGCTTATGGTGGTGGAGATAAGGGACAAGATGGCAGGACAGCCATTGGAAGGAACTGTAGTAGGAACGGGAGGGGACATGGCAACAAGGACAACAGCATTGTCTTTCCAGAGATGGCTGAGGCCAGCCCTCCTAAGTACTGCATTCTTCCTATGGCCTGGAGAGCAGTGGCTGATTGTGGGGTCTGCTGAAGGAGATGGAAAGAAAGCAGGAGACTCCCTGGCTCTCCATATCCATGGGAGATCTGGTCCCTAGTGCCTTTCCATCTCCACACTTAGGCCTCCTGCCCATAGGCTGGGTGTTTACTGGGAGCAGAGCTAGATTTGGAAGGAAGGGGAGACTGTGTCTCCTGTATCATGAGGGGATTGGAGAGCCTCCAAAGAAGACTCAAGGGAGAAGCAGCCAGCAGATGCTATGTGTGCAGTCTGGGCCCTCACCTAGCCTGCTTCTGCTCTGCCTTGACTTCCCTACAG
Seq C2 exon
GTGTTAGAGCTGCGTCGGCCGATGGACTCCCGGCTGGAGCACGTGGACTTTGAGTGCCTCTTCACCTGCCTCAGTGTGCGCCAGCTGATCCGAATCTTTGCCTCATTGCTGTTGGAACGCAGAGTCATTTTTGTAGCAGATAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
NA
C2:
PF0214116=DENN=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]