GgaINT0058511 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14305221-14306539:-
Coord C1 exon
chr5:14306292-14306539
Coord A exon
chr5:14305405-14306291
Coord C2 exon
chr5:14305221-14305404
Length
887 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
GTTTTTTTTTTATTTACTAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTACTGCACTGGCTGGGGAGACCCACATTATATGACGTTTGATGGACTGTACTACAGCTATCAAGGGAATTGCACATATGTTCTTGTGGAAGAGATTGAAAAAAGAGTTGACAACTTTGGTGTCTACATTGATAACTACCATTGTGATGCACGGGATATAGTTTCCTGTCCACGAGCACTCATTGTGAGACATGAGACTCAGGAAGTGCGCATTGTAACAGTGAAACCAAATACCCTGGAAGTAGAG
Seq A exon
GTATTGGAGAAAGTTACCTTTGATTTCTTGACAGAAATTTTAATAAATCATCAACCTCATCATTATATTCACTGCATTAGGAGAAAATTAAAAATTGAATGTGTGTTTTAGATTTTAAACCATTTTGGATAATTAACTTGTACTGCATTGAAGGGATGCTTTTCTGAATCTGAATACTGGGAAAAGTTTCAACAACTCCTTCCCTTATTTATTACAAATTTTTGCAGTGTGTTCTCTCACAAATGAATAAATACGGATGAATTGCTAAGAGTTAAGATTATAAAATAAATTAATTTACAATTGATATTTGCGTAAGAAAGGAAGATATTAGATTTTGGGAGGATACAATGTAAACTAGACATTGCAATTAAAGAACTGGGCTTAAGCATTTTAAAAAACAATTGATACTATCTTCTTAAATTTTTCAGAGAAGAGACTCTAATGTGTTTAAATGGTAACTATCATTCTCAACTTTGGGAAGTCAAAACTGAGTGAGAAGTGTTTATTTTTAGACTTGACTTGTCCAGTCTTCATTGAACATTACTGTGTAGGAATATTACTAATTAGGTTGGTGTAAGTGCATCATAAAAGAAGGTTAATAGTATCCTGGACTGCATTAGGCAGTACTTAATGCCCTAGTCACCATAATAAATCTGTAGAGTGTTTAAACTCCTAAGTATATTCTAATTTACTAATGGCTGATAGGACTTCCTGGCTTGGAGAAGGCAAGTTTGGCTTTCCATTATCATATAAGGAAAAACAGGAACGTTTCTTATAAACTAAAGGTCTTTACAATTTTATCTCCAATGCAAAGTAATGAACAGTTGATTGTTTTCTAAAGTCAAATGAAACACATGTCTCTTTTTTGTTTTTTTTTTATTTACTAG
Seq C2 exon
GTGACTGTAAACAAACAGCCTGTGGCTTTGCCTTATAAGAAATTTGGCTTGAGCGTCTATGAGTCAGGCATAAATCGTGTAGTGGAAATTCCTGAACTTAAAATGAATGTGTCCTTCAATGGCTTGTCATTTTCTATCAGAATGCCCTACAGCCTGTTTGGAAACAACACTCAAGGACAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=96.4)
A:
NA
C2:
PF0009420=VWD=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTATCAAGGGAATTGCACA
R:
CCAAACAGGCTGTAGGGCATT
Band lengths:
355-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]