MmuINT0102351 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148932523-148933562:+
Coord C1 exon
chr7:148932523-148932770
Coord A exon
chr7:148932771-148933378
Coord C2 exon
chr7:148933379-148933562
Length
608 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCAGACATGTTGACTACAGGTA
3' ss Score
3.61
Exon sequences
Seq C1 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTCTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTGGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGTGATGCCAATGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCGCCACGAGACCCAGGAAGTACAGATCAAGACCGTGAGGATGATGCCCATTGAGGTGGAG
Seq A exon
GTATGTGGCTGGGACTGGCTGGGCATTCACAGTGTGTCTGTAATGGCCTTAGACTGTGGGCCACCGGCAACAGAGGACTAGGACTAGGCTGCACATCCATTGGACCAGACTGGAGCCATGGCATGTTGTTGGGGCTCCTTAGGGTCCTGTCAGCTCTTCTCATGAGCTCTCTACATGAGCACAGAAACTCCCTCTCTGAGGATGGGTGAATAGGAGGTGACTGTGTCTAGCTGTCTTCTCTATCCACTGGGGTCATTGGTGATGTTTATGGAAACAGCTGAGGAGCCCTGACCCTCTCATGGAGCCTCAAAGTCTCTGGAAGAGTCTTCTTGGGCTCTTGTGGGATGAGCTGGGACAAAGGTCAGTATGGTAGAAAGGAAACAAGAAGGGAAGAGAAAGATGGAGGGACAGGAAAATCTCCCCTTTTTGAATAGAAGTGGAGATATCACTGGTGCTATCCCAAGGTGCAACCTTGCCTTCCTGATCATCTCTATGGCTTCCAGAGAGGTCTATAGAGGGACAGGGCAGAGCCTGGCAATACTCTAACAGGTGGCAGGCTTTAGCTCCTGTCTCAGGGGCCTTCGCTGACTCAGACATGTTGACTACAG
Seq C2 exon
GTACAGGTGAACAAGCAGTTAGTGGCTTTGCCCTACAAGAAGTATGGGCTGGAGGTATACGAGTCTGGCATCAACATTGTGGTGAACATCTCCAGGCTAGAAGCCAAGATCTCCTACAATGGCCTTTCTTTCTCCATCCGGCTGCCCTACAAACTGTTTGGCAACAACACAAAGGGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=96.4)
A:
NA
C2:
PF0009420=VWD=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGTGCTGGTGGAGGAGA
R:
ACACTGGCCCTTTGTGTTGTT
Band lengths:
356-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: