HsaINT0106751 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1096325-1097365:+
Coord C1 exon
chr11:1096325-1096572
Coord A exon
chr11:1096573-1097181
Coord C2 exon
chr11:1097182-1097365
Length
609 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCATGGTGTGTCGGCCACAGGTG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGTCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
Seq A exon
GTAGGCACAGCGTGGCCACAGGAGGCTGGCATGGAGGCGGGTGCTGACATGGGCCCCAATGCACCCTGGTTCCCCAGGGGCCAGAGGACTGGGCTGTGGGGGTGCCAAGGCATAGCCTCTCCTAGAGCTGGGCTAGAAGGTAGGATGGGGTGGGCGACTGGCTCCGGGACATATCAGCTCTTCCTGCAGGCCCTCCAGGTGTGTCCTGGGCCCCTCGAGCCCTGGCACCATGCCACGCTGGGCACAGTCTCTGCAGCAGAAGCTGCCTCCTGAGGACAGAGTCAGGGACAGGGCTCTGCACACCCTTGGCTGAGATGCCCCTACTTGCAGGGGAATCATTGGTTCTGAGGCTCAGGAGGCCCCGGGAGCCTGCGCCGGGCTCCACAGTCCCCAGGTGCTCCCAGGAGAGCTCCTTCACTGGCTCACCCATGGGACCAGGGTCTGGTTGGGAGCAGTGGAGTGGAAGCAAGAAAGGGGGCAGGAAAGCGGGGTAGGCAGGGCCCTCTCCCTACATGTGTAGGTCAGAGAGCAGGCGGGGTGGGGCAGCCCTGGAGCTCTCACAAGGAGAGGACCGAGGCAGCTGCAGCTCCCATGGTGTGTCGGCCACAG
Seq C2 exon
GTGCAGGTGAACAGGCAGGCGGTGGCACTGCCCTACAAGAAGTACGGGCTGGAGGTGTACCAGTCTGGCATCAACTACGTGGTGGACATCCCCGAGCTGGGTGTCCTCGTCTCCTACAATGGCCTGTCCTTCTCCGTCAGGCTGCCCTACCACCGGTTTGGCAACAACACCAAGGGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.3=96.4)
A:
NA
C2:
PF0009420=VWD=FE(39.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTATGTCACCTTCGACGG
R:
ACAGGCCATTGTAGGAGACGA
Band lengths:
350-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)