GgaINT0058519 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16013057-16013777:-
Coord C1 exon
chr5:16013673-16013777
Coord A exon
chr5:16013098-16013672
Coord C2 exon
chr5:16013057-16013097
Length
575 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AACTCCTTTCTTGTTAACAGTTC
3' ss Score
6.96
Exon sequences
Seq C1 exon
AATGCAACACAAGTTTGTGCACAACTGAACCCCCCAAGTGTACACTGGGATTTGAAGTTTTTTCTTATATTCCCAGTGATGAGTGCTGTCCTGTGTACAAGTGTG
Seq A exon
GTAAGTCCTTTGGAAATATGTTTAAATGACTAGCATTATATATTATGTGATTTAGATTTAATGAGACTGCATGCAGTACCATAATGAAAGCAGTCGGATTCCATGAATTAGTTACTATTAACTCTGTTTACTAATAATATGACATTACAGATGTGAAATTAGATAGAGTTCATGTAGCTCAAGTGCATTTTTCCTGCTTGTAGGTGCCTGTAGAAGCAGCTACAGAATTAACTGAGATTGTGGTCTCAGCTTAACCAAGCAAAATGTCCCTGTTAATGTATCAAGGAGAAGATAGATTGTTGATAATTGATACAGGGAATTTCTTGTAACTGTTACATGGACATTCTTGGCTAGGAACTCGACTATGTATATTGGGTTAAATCTTCCTCCCTTGTTGCATATTCGGTATTTGTTCTTGTACTTTGCGTACGCCACATCTGCTACCAGAAATGTGGAATAACCAGTGTATTTGAACATGAGCATTGCGATTCACTGTGGAAGAAATGAGTGTGACTAGAGTGCAGTAAAGACTTCTTTTCTCTGATGTAACTGCCTAACTCCTTTCTTGTTAACAG
Seq C2 exon
TTCCCAAGAAGGTTTGTGTACATCAGAATGCTGAGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(14.9=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]