RnoINT0000863 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214690187-214690472:+
Coord C1 exon
chr1:214690187-214690241
Coord A exon
chr1:214690242-214690449
Coord C2 exon
chr1:214690450-214690472
Length
208 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TCCCCACTCTTTCCTCCAAGTGC
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGATTCGAAGTGAAGAGTGAGCACGTGCCTGGAAATGCTTCCTGTCTCTCCTGTG
Seq A exon
GTAAGTGAGGCCACCGGGGTGAGGAAGGCCACAGGCTGACAGGCTGTGAACAAGGGGGCCAGCGGAGGGAACATGCTCTCTCCTTGGCCTTCTTTGTCATGGCTACGGGCTATGTGCTATCGGCCCTGAGCATCTGCTCAGATGTGTATGCCAGCCAGGCTGAGGCTCAGGATAGCCTCTGATGGCTTTCCCCACTCTTTCCTCCAAG
Seq C2 exon
TGCCCAAGGGTGTGTGCGTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(3.1=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]