HsaINT0106760 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1101558-1101952:+
Coord C1 exon
chr11:1101558-1101662
Coord A exon
chr11:1101663-1101911
Coord C2 exon
chr11:1101912-1101952
Length
249 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TCTCCGTTCTTTCTCCCAAGAGT
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGTGCAACACCAGCCTGTGCAAAGAGAAGCCCTCCGTGTGCCCGCTGGGATTCGAAGTGAAGAGCAAGATGGTGCCTGGAAGGTGCTGTCCTTTCTACTGGTGTG
Seq A exon
GTAAGCAGGGCTGGTGGGCAGGGCAGGGAGGAGGCTGCCGCCCGGGGTGGGGTGGCTGTAAGGGGGTTGGCTCCCTCCTGGGGGTCTCAGATTCTGGGGACACAGATGGCTGTACGCTTGGCTGATGCACCCACCCCAGCCCTGAGCGCTCGCTCCATCCACTGGGTGTGCACCGGGAGTGGGGGTCTGGCCAGGTGGCCGCCCCGGGGCAGTCTCCAACGAACGGCCTTCTCCGTTCTTTCTCCCAAG
Seq C2 exon
AGTCCAAGGGGGTGTGTGTTCACGGGAATGCTGAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009313=VWC=PU(12.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGCCTGTGCAAAGAG
R:
TGGTACTCAGCATTCCCGTGA
Band lengths:
140-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)