GgaINT0058525 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16007857-16009995:-
Coord C1 exon
chr5:16009866-16009995
Coord A exon
chr5:16008354-16009865
Coord C2 exon
chr5:16007857-16008353
Length
1512 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCCTTTCTCCATCTTAACAGGTA
3' ss Score
11.31
Exon sequences
Seq C1 exon
GTATACCTCTGGATAGCCCCACACCGTGCTCTGTCCGTGAGAGAAAAGACTTCATTGTCTATAAGAACTGCCGTTCTCTGGAGAGAGTTGTCCTGACTGAATGTGAAGGAACATGTGGAACTTTCTCACT
Seq A exon
GTAAGTAAACTGATTGGGCAGTGAGATTTGAATTCTGCTACTGACATTGTTTATGTAAAAGGAACAAAAAATTGATGGACCAGAGAGTAGCAGAAGACTTGAAACTATCAGCTCCCAAAATCATGGGCACAAAACCATGAAATCTCTGACTCAGCAGTTGATTCAACTTAACACAAAGCAGAAAAGGATACTGACTTGCGTTGGAATTAAGACAGCTATGGCAAGTTCTATCTTTGTTAAGATATGACTCATCTTTCATTTGTGTCAGACTGTCTTGGATAGAAGTCACTGCAAGAGAAAGTGGATTATTTCCTGCAATGTGAATGAGACAAGGGAGAAGCCTATGTTGATGTTCATAAGCTGAAAAGCTTCCTTTCAAGAGTTAGCATATAAACATATACATTAAAATATAAAATGAAGTAGACACATCTTTTAAAGAAAGTTTCAAACATGCACAATTTTATACGGCAAAGAAGTGAGAAAACGAATGCCTTAGGAGTAGTGTTGGTAGAGTAATTTCATTATATGTTACTCCATGAAAACCTACAAGAAAGTGGCTAGTGTGACATGATATCAAGCTCTTAAAACACATTAGAATAATATAATTCTAAATCCCCAAATAAACTGTCACTTGCTGCCTGTTGCTGCATATACCGCTGAGTACCTTAGAATCATAGAATTGCTCTGGTTGGAAAAGACCTTAAAGATCATCGAGTCCAACCACAATCTAACCATACTACCCTAACTAACAACCCTCTGCTAAATCATGTCCCTGAGCAGGGACCTTACATAAAAGGAAACTGGCCTTTACTCTGAGATTGAACCCCAGTTACCCAGAGGGTTTTATTGGCATTTTCAAATACCTCACAGTCTTGGAGTCCTGCTGGAGCTGCCTCTGTGTGCAAGCATACGAAAAAGATTGACAGATTCTGCATGTTAGCATTGGTATTTGGGAAAGTGATGGACACAATGCTGCAAAAAAAAACATCCCTATTATGAGACAGCAACAGAAGGAACTACTGGTTCATCTTCCTGTTAATACTGCATGTTTTGGAATACGCACTTGGATTCATCTGATACAACTGTGGCTCTTGTAGCCGACTGATAAGATGTCATTGTAGGTGGCATTGTAGCCACAAGGCTCTGCAGTTTTCTTTCTCAGTTCAGGGCTGCATCTGCCCTTAGTTGTTTGATCCGGCATGTTTAACATCTATCTGTGCTGGGATGATGAGAGGAATATAAGGAGGCCGAACTCCTAGAATTCATTGCATTTCTTTAGTAGGTCCTAGACTTAATTTCTTTTACAAGAAAATCTCATCCAAATGCACCGTATTTTAAATGCATATTGTTACAACTGATGACAGATGAGTGTAGGACTATTCATAAGCCCTAAATATGGCTCTTTTGCATACAGAGCCAAACTTCTCACGGAAGTTCTGTATCTGTCTTCACTCTCTCTTTTGTATTCTGACTTCTAGTGCAAAATGATGCTGCCTTTCTCCATCTTAACAG
Seq C2 exon
GTACTCTGTTGAGGCCAGTTCTATGGAGCACAGTTGTTCCTGCTGCAAGGAAGTAGAAACTAGCATGAAGGAAGTGGAACTGAAATGTCCCTCTGGGCACTCAATTACACATAAGTATGTGTATGTGGAAAGCTGCGGCTGTCAGGACACTCAGTGCATAGTCCCAGAATCTAGTGAGTCTCAGAGCACAGAAGAAAATGATGAGAGCACTCAAAATCACAAGAGAAGAGCCATCAGCTTAACATCAAAATGAAGCAGAAAAAAGCTAACAGCACTCAAGTAAAGGAGCTATGCACCACTCTGATCTTCCTTGACAGCTTTTGAACTTAGCTTTTCCCCGCTACAGTATCCTGTTTGTTCTCTAATTATTTTTAACAATGCTCTATTTATTTGTGTACAAAAGTACAGTGAACTTTCTTCTGAGTTGCATACACCTATGGATCATTTTATAATCAACTTATTTTCTCTGAATGATTAAAAGCACATTAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGAGTTGTCCTGACTGA
R:
TCAGAGTGGTGCATAGCTCCT
Band lengths:
356-1868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]