RnoINT0000870 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214692571-214693043:+
Coord C1 exon
chr1:214692571-214692697
Coord A exon
chr1:214692698-214692820
Coord C2 exon
chr1:214692821-214693043
Length
123 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TCTGCCCTTCTCGTCCCCAGGTA
3' ss Score
12.41
Exon sequences
Seq C1 exon
GCATCCATAACCCTAACAACACAGTCCCTTGCTCTGCCATACCCGTCATGAAGGAGATTTCCTACAATGGCTGCGCCAAGAACATCTCCATGAACTTCTGCGCTGGGTCCTGTGGGACTTTTGCCAT
Seq A exon
GTGAGTCTCAGGCTACAAGTGTGATGGAGGGGTGGAGGAGCTCAAGGATGGGCTCCCAAGGAGGGAGAACTGTGATGCTGTTCTCAGGGAGGCTGGCACTCATTCTGCCCTTCTCGTCCCCAG
Seq C2 exon
GTACTCTGCCCAGGCCCAGGATCTGGATCATGGGTGTTCTTGCTGCAGGGAGGAGAGGACCAGTGTACGAATGGTTTCCCTGGACTGCCCAGATGGCAGTAAGCTGAGCCATAGCTACACACACATCGAGAGCTGTCTGTGCCAGGGCACCGTCTGTGAGCTGCCACAGGCCCAGCAAAGCCGCACCAGGCGTTCTAGTCCCCGGCTTCTAGGAAGGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGAACTTCTGCGCTG
R:
TAGAAGCCGGGGACTAGAACG
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]