MmuINT0102366 @ mm10
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:141754058-141754693:+
Coord C1 exon
chr7:141754058-141754184
Coord A exon
chr7:141754185-141754314
Coord C2 exon
chr7:141754315-141754693
Length
130 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTGCCCTTCTTGTCCCCAGGTA
3' ss Score
12.1
Exon sequences
Seq C1 exon
GCATCCCTCAAAACCAGACCAGAGTCCCTTGCTCTGCTGTCTCCGTCATGAAGGAGATTTCCTACAATGGCTGCACCAAGAACATCTCCATGAACTACTGTTTTGGGTCCTGTGGGACTTTTGCCAT
Seq A exon
GTGAGTGCCAGGCTACAAGTATGAGATGGTGGGGGGCAGGTGGAGGAGCTCAAGGACAGGCCTCAAGGAGGGAGGACTCTGATGCTGTTCACAGGGAGGCTGGCACTCATTTTGCCCTTCTTGTCCCCAG
Seq C2 exon
GTACTCTGCCCAGGTCCAGGGTCTGGATCACAGGTGCTCTTGCTGCAAGGAGGAGAAGACCAGTGTCCGAAGTGTTACCCTGGAATGCCCAGATGGCAGTGAGCTGAGCCATACCTACACACACATCGAGAGCTGTCTGTGCCAGGACACTGTCTGTGGGCTCCCACAGGCCCAGCAAGTCCGCACCAGGCGTTCTAGCCCCCGTTTTCTAGGAAGGAAGTGAATGGGTTGTACCGTGCACATTCCTTCGCATCTTAAACTATTCTGCTGACTCTCTGACCTTCTCCACTCCTGGCTTGGCTTCTTCTCTGCACATATTTATTTTCGGAGTTTCTGTTCCATTCTTTGCTTTCCGATAATAAACTCAGGCATAGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515:ENSMUST00000187945:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0000717=Cys_knot=PU(33.3=81.4)
A:
NA
C2:
PF0000717=Cys_knot=PD(65.7=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGAGTCCCTTGCTCTG
R:
GCACAGACAGCTCTCGATGTG
Band lengths:
254-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types