GgaINT0059790 @ galGal3
Intron Retention
Gene
ENSGALG00000008332 | F1NXV6_CHICK
Description
NA
Coordinates
chr5:25594189-25594504:-
Coord C1 exon
chr5:25594399-25594504
Coord A exon
chr5:25594320-25594398
Coord C2 exon
chr5:25594189-25594319
Length
79 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TAACCACCCTCTCCTCACAGATT
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTAACTGTGCTGCTAATCTGGGCCAGAACTATCGGGGGACAATTAACTACACCAAATCAGGCATCGAATGTCAAGTGTGGACAAGCAAATATCCACATATACCTAA
Seq A exon
GTAAGTTCATCTCTCGCTTTCCCCTAAAGGGTTCTCCAGGGTGTCTTTCCTTCCTAGCCTAACCACCCTCTCCTCACAG
Seq C2 exon
ATTTAACGCCTCCATTTATCCTGACCTCACTGAGAACTACTGCAGGAACCCAGACAACAACTCAGAAGGTCCATGGTGCTACACACGAGACCCAACAGTGGAACGGGAAGAGTGCCCCATTCCAGTATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332:ENSGALT00000013559:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(42.9=91.7)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=95.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGCCAGAACTATCGGG
R:
CTCGTGTGTAGCACCATGGAC
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]