MmuINT0060141 @ mm9
Intron Retention
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91473133-91473453:-
Coord C1 exon
chr2:91473348-91473453
Coord A exon
chr2:91473270-91473347
Coord C2 exon
chr2:91473133-91473269
Length
78 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CGAGCATCCTTCTCTTACAGAAT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTCGCTGTGCTATGGATCTGGGTGTGAACTACCTTGGGACTGTGAATGTCACCCATACCGGTATCCAGTGCCAGCTGTGGCGGAGCCGCTACCCCCACAAGCCTGA
Seq A exon
GTGAGTGCTTTGCAGGCCAGGATGGGAAGCAAGGACACACTCGGGAGGCACAGGTCCCCGAGCATCCTTCTCTTACAG
Seq C2 exon
AATCAACTCCACCACCCATCCTGGGGCAGACCTGAAGGAGAACTTCTGCCGCAATCCAGACAGCAGTACCACGGGACCCTGGTGCTACACCACAGATCCTACTGTGCGCAGAGAGGAATGCAGTGTCCCTGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-F2:NM_010168:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=91.7)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTGTGCTATGGATCTGG
R:
GTCTGGATTGCGGCAGAAGTT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: