GgaINT0059918 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12865613-12866025:-
Coord C1 exon
chr5:12865812-12866025
Coord A exon
chr5:12865736-12865811
Coord C2 exon
chr5:12865613-12865735
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTTACTTTTTTTTGTCTAGTTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GCTCACTGCAGCCTGAAAGTCCTCTGAAAGTGAGTATAGACCTGTTGACAAGAGCAGTTGAGGCCCTTGTGCGACTCCACATGAATTCATGTAGCATGAGTTCTGCAACAGTTTCTCCAGAAGATAAGACTACCAAGGAAGCATGGACTGCCACAGAACATCTCCAGTTCACAATATTTGCTGCACATGGAATTTTTCCTGATTGGGTATCCAA
Seq A exon
GTAAGTAATTTTTTAGTTGTAGAAAATCATCCCTTTATGGAGTTCTTTTTTATTTACTTTACTTTTTTTTGTCTAG
Seq C2 exon
TTTTGAGAAATACTACTTGATTTGTTCTTTGACCCATAATGGAAAAGATCTCTTCAAACCTGTTCAGTCCAAGAAGGCTGGCGCATACAAGAACTTCTTCTACTTGATTAAATGGGATGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
NA
C2:
PF0079219=PI3K_C2=PU(29.3=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGCCACAGAACATCTCC
R:
GAAGTTCTTGTATGCGCCAGC
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]