MmuINT0119672 @ mm10
Intron Retention
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:116373728-116376433:-
Coord C1 exon
chr7:116376223-116376433
Coord A exon
chr7:116373851-116376222
Coord C2 exon
chr7:116373728-116373850
Length
2372 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATTAAGCTTTCTTTTCTCAGTTA
3' ss Score
5.28
Exon sequences
Seq C1 exon
GGTCACTGAATCCTGAAAATCCTGTTCAAGTAAGCATGGATCACCTAACAACAGCGATTTATGATCTTCTCAGGCTCCATGCAAATTCTAGTAGGTGTTCTACAGGCTGTCCCCGAGGGAGCAGGAACATCAAGGAAGCATGGACTGCAACGGAGCAGCTCCAGTTCACTGTCTATGCCGCACACGGAATTTCCAGTAACTGGGTATCAAA
Seq A exon
GTAAGTAGCTGCTTAAAGGACATCCACAGCTTTACCCACAAGTTACACTTAGTGTTAGTAACTACTTTTATCTTTTTTGTTTAAATGAACAATTTAAAGATCACTGGGAACCCTTGTACCTTTGTGGTTTTAATAAAATTACAGAGCTGTCTGAAGTAATTGTAGTGAAAAATGTCATTTTTATGACATAAAAAAAGAGCAAGAGAGCCAGGTATGATGGTGCACACCTTTAATCTCAGCCCTCTGAAGGTGGAGGCAGAGGCAGGCAGATCTTTGAGTTCAAACCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCTGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAATAAAACAAGAAAACAACAGCAAAAAACAAAAAACAGAAAAAGACAAAAAACAACAACAACAACAAAAAACACAGGAAAATATATAGTGAAATTGAGAAACAAAAATGTTATTTAAAAGAATTACCTTAAGATTGCTGAGCTTTTCTGCCTGCCTTTTAGAATCAACATAATTTGAAACAAAATGTAATGGGACTAGAATTCAGGCCCTATATCCCTTTAATAGCTCACAGTCTACCAACTGCTAATATTTGAATTCTGTAAGAGCATATTCCTTCTTATGATGTCTTTTATAAGGGTTTTCCTCTTGACTTCTTTTGTTAAAATCTTTAAGGCATAGCATTTTGGGGCCAATTTTAATTTACTTTAAAATAACTAATATAAACTGAAAAGTGTAAAATTAATATTTTACTGAAATATGTTCATGGTGGCTTAAAACGTTCAATAAAAAAGTCTAGTGGAGAGTTAAAAAATTCCACTTGAATTGAGCTTCAATTAAATTCAATTGAATTGAAATGATAGAGTGTTTGTTGTTGTTTTGTTTTCAAATAGGGTCTCTCTGTAGTCCTGGCAGTTCTGGAATTTGCTATGTAGCCTTGAACTCTGTAGCTGAAAGTGGTGTTGTTAAGTCATGAAAAATAAGTGTTTACTGAGCCCCATCTACAAGTAGAGTTTTCAGTACTGGAAATCCAGTAACAAATGAGAACAATGCCTTTCTAGAGCGTTTGTTTAAATGGCTATTCCTGCCTGTTTCTTTTTGTCTGTCTCGCTATACTGCTCAGGCTGCTCTCATCTTCAGAGACTGAGTGATCCTTTCACTGCAGCCTTTTAAGTAGTAGGGTTACAGGTGCGTTCCAAAATGCCCAGCTGAAAACATGGCAAACAAATTGTGTTGCTTTTTTTAAACTTGTATTTTCCTTTGTTCATTGGAGTTCCATATAGGAGGACCCACATAGTAGGAGAGAACCAACTCCCACAGGTTGTCTGTCCTTTATCCTCCATACACACCCTTTCATGGACTTAGATACACTCTAAATAAATGAAATGAAAAAAAAATGTTTTTTTCATTTGACACAGGGTAGCCCCAGCTGTCCAAAAACTCTCTCTATAGACCAGGCTGGCCTCAAACTCAGAGATCCACATGCCTCTGCCTCCCAAGGTCTGGGATTAAAGGCGGGGGCAACCACTGCCCTGTATAACTTTAAGTTATAGATATAGGTGGGCATGGCATGCAGCCCTTTGGTCCTAGTACTTGGAAGGTGGAGACAGAGGAATGCAAAGTCTCCAAGACCAACCACCACCCTACCTATTCACACCCAGAAAAAGCTGTGGATAGGAGTAGAATGATTAGCATGTAAACCTAGAAGTAAGTTAGAGTAGAAGAATGCCGTTTTATTGAGTCCAAGGTTCTTAGAAGATTGTCTTATTGTGTCAGTATGAACAGCAGTTTGGAACTAAGTTATTGGTGTTTAGTGAAAAGAATGCAGCAATACCTGTGAAGATTGGCTGAATTCCTGGGTCTGTATATTGTTAAATAAAGCTTAGCTGAATATTACTGTGGTGTAGCAAAGGAAAGTAGCATCAGCATCTCCACTACTGCTAAGGAAGAGACCAAAGAAACTGAGCAAACCTCAACAAAAGACAGGGATGTGATAGAAGTGACACCAAGGGAAGAGAATGTTGGTACTTCGTGAGTTTTAACTAGAAATGGATAAGCACATAGTCTGTTATCATTTGCCTGCCCTCTTAGCACAATACCTGAAACAGCTTATATTCTATGGGGATCATTATAGTCCCAGCATTCCCAGCCCCAGGCTGACACTTGGGGTATATGCTTCCCACGCTACTTTTTTTGTTACACCATTCCTCTGTTTCTGTAGAATCTTCAAAGGTTAAATTTCACGTGGATTTCAAAAAACAAAAGGTGACCATTTTGTCACTTGGGAAAAATTGCTAATGTACTTGTGTTAGATAGTTATTACCAACCTAGAAATCAAATTAAGCTTTCTTTTCTCAG
Seq C2 exon
TTATGAAAAATACTACTTGATATGTTCCCTGTCTCACAATGGGAAGGATCTTTTTAAGCCTATTCAGTCAAAGAAGGTTGGCACGTACAAGAATTTCTTCTATCTTATTAAATGGGATGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660:ENSMUST00000170430:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
NA
C2:
PF0079219=PI3K_C2=PU(29.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types