GgaINT0061033 @ galGal3
Intron Retention
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70745799-70748049:+
Coord C1 exon
chrZ:70745799-70745879
Coord A exon
chrZ:70745880-70747990
Coord C2 exon
chrZ:70747991-70748049
Length
2111 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TGTTTCTTTCTATTATTTAGGCT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGCCTGCATAGCATCCAGAGACCCCTACTGCGGCTGGGTGAAGGAGAGCGGGGCGTGCACGCAGCTGGTCCTTGGTGCTAA
Seq A exon
GTGAGTAATGACTCCTGCTGGACAAGTATGAGGCAGTGGCAGTGGCGCCAGGGAGACTTGGACTGAGCTGTTTGAAACGTGGGGCTCTCAGGGAAGAAAAATGTGTGAAGTGTTTGTTCCTGCCCGATTTGCATTCTCTGAAATTTCTCACAATTATTTTTCTTTTTTTGGTGTGAACTCTCAGCTGAACTGGTAACTGCTGAAAGAAGAGGAAGAAGAAAATGAAAGAGCTGTACTAAAGCCCACGTGTTGTTGAAAAGGGGGAACTGGATGGCTGTGTCTGGACCAGCCCACACTGGAGCCATCACAGCTGATTAAAGAGGCAATAGAATCCAAATTAGATTACTGTAGCAATTTGTCCATTGGAAACAAAACCAGTCCTTCTAATTTACTGTGCATTACTAAGAGGAATCACAGGGCACAGAAAGAGCTTAAAGTAGATTCAGCGAAGGGCTGGATTTCCCCTTGCTTAACAGTAGAATTTATTTACTTCATAATAATAGAAGCATATGAAACATATGAAAATATGATTATCTAAGTCTCCTTTTAGAGAGCAGATCTGTTTAAAACATCGTATTCCTTGGCTACATGTGACACTCTGAGGGTACAGCTTTACCTCAAGTGTAGTACAAACATCACACAACCGCAGTAGCCTCACAGCCAATACAGCTTAAACCTACTTCTGTACTGGATGAGTTATCATTCCTTCGTTTATTCCATGGTCTTAATTAGCTGTTTAAATTCCAATTGTTTTGTCCATTGTGGATGTTATAGCTTTATCTGTCTGAATATGCTTTATCACAGAAATGGGAACTGGTTGTTTTGTAGAATAACATTAAAGTGCACTTGTGTGCATATAAGGGTTTCTCAGTGTTCTTGAAGTACTTGAGAGTTTTTGCACTTGGCTATGACAAGTTTTAGAGGACTTACACACCTTACCATCAAAAGTGGCTCTTCTGCTTATGAGAAGTGTCATCTGACCATGAGAAAGAAATTCTTTACTCTGAGGGTGACAGAGCACTGGAACAGGCTGTCCGGAGAGGTTATGGAGTCTCCTTCTCTGGAGGTATTCAAAAACCCACTGGGACACTTTTCTCTGCAAGCTATTCTAGGGATCCTGCTTTAGCATGGGATTGGACTAAATGATCTTCTGAGGTCCTTTCCAGACCCTGCAACTCTGTGATTCTATGAGACAGACACACTGTAGCTTGTAGTGGTGCAGTCTGCAGGTGAGCAAGGCAGGTGACTCTCTACCCGATGCACAGCACTTAGGAAGAAGATGCAGATCAACTTTCAGGTGTCTGATGAACTTCTAAATTATCCAGCAGGATAACAGGTGCCTTCCTGGAGTTGGTGACAGTTGAGCAGGAGTTTTAAGAACACAGCTCTGGGAATTAGGTGTGTGCAAGGATAATTATACTTCAACAGCAGGATCCTAACTAATGTAGACAAAAGCTTGTTCTGGAGGTTTTCCAAAGCTCTTGTCACTCCTCTTTTACCGTATTGGGAACTTGGAAAAGCAGCTTCACAAAATTTCTGGCACGGGTTAAAAGCCTAAGTTGGGCATGCCAGCTAGGAAAGCCTGTACATATTTATCAATCAAGGCCCGTAGATTCATTGTAATTCACTTTGTGATCTGGACCTTATGACCTGCAACCTTTTCCAGTGCAATACTTAAATAATTTTGAAAATGCAGATTGTGTTGCCCCAGCACAGTGCCTTAGCCCATAGGTTAGCTTCCTTCTTATGTCAAAGTATTGGTGCACTTTGACTGCTGCATGGACAAGTCAAGGTAGGATCATAATTGCTCCTGACAATGTCTTTTTTTTTTTTATAGTTAGCAATTTAAAAAGATATGAATGTTTGCCTCCCTTGACAACAGGATACACAATGCGTTTTCAAAGAAGAAGACAAGGAATCACTTTCTGATGACAAATAATTTGAAGGCCTGTATTTCTGGTTTTTTTTAGACACTTTAGGAAAGTTTCAAAGAAATGTTCAGTTTCATGATGTGTCTTTATTTCAGTTGCAGATGCAATAATTTTTTACTGCACAGGTAGTGCCCTGTGATAGTTGTTACTCATGCTGTTATGTTTCTTTCTATTATTTAG
Seq C2 exon
GCTGGCATTTGACCAGGACATAGAACATGGCAATACAGATGGCCTGGGTGACTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294:ENSGALT00000003608:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(69.7=82.1)
A:
NA
C2:
PF0143720=PSI=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]