GgaINT0061868 @ galGal3
Intron Retention
Gene
ENSGALG00000014859 | ZNF131
Description
NA
Coordinates
chrZ:13031781-13032402:+
Coord C1 exon
chrZ:13031781-13032025
Coord A exon
chrZ:13032026-13032060
Coord C2 exon
chrZ:13032061-13032402
Length
35 bp
Sequences
Splice sites
5' ss Seq
TCCACNNNN
5' ss Score
0
3' ss Seq
NNNNNNNNNNNNNNNNNCTGATC
3' ss Score
0
Exon sequences
Seq C1 exon
AAACAAAGAAAATTCATCAGCCTTAGAATCAAATCGAACAGAAGGTAAAACTAAACCGAAAAAGAGGAAGATAGCTGAAACATCTAATGTTATCACAGAATCACTGCCATCTGCAGAATCAGAGCCCGTTGAAATTGAAGTTGAGATTGCCGAGGGAACAATTGAAGTGGAAGAAGATAGCATCGAGACAATAGAGGAAGTAGCTTCTGCAGAGCAGTCCATAAAGTATATACAGACAAGAATCC
Seq A exon
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTG
Seq C2 exon
ATCCTTCATGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAACTGTCACACATGAACAATTTATTCCACTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAAACACCCTCTACTGAGAGTTACAAGTGTGACATATGCAATAAAAGGTACCTACGAGAGAATGCTCTGAAACAGCACCTCACCTGTTACCACCTTGATGAAGGTGGTGCCCCTAAGAAGCAAAGACCTGGCAAAAAAATACATATATGTCAGTACTGTGATAAACAGTTTGACCACTTTGGGCATTTTAAAGAGCACCTTCGGAAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859:ENSGALT00000023979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=6.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=19.1),PF121713=zf-C2H2_jaz=WD(100=19.1),PF134651=zf-H2C2_2=PU(38.5=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAGGGAACAATTGAAGT
R:
ACCTTCTACCTGTTTGCATGAAGG
Band lengths:
124-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]