HsaINT0186188 @ hg19
Intron Retention
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43161351-43162033:+
Coord C1 exon
chr5:43161351-43161708
Coord A exon
chr5:43161709-43161810
Coord C2 exon
chr5:43161811-43162033
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
AATTGTTTTACCATTTTAAGGAG
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAACAAAGAAAACTCAGCTCCCTTAGAGGAAAATACCACAGGAAAAAATGAGGCCAAAAAAAGGAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCATTGCCATCTGCAGAATCAGAACCTGTTGAAATTGAGGTAGAGATTGCCGAAGGCACCATTGAAGTGGAAGATGAAGGCATCGAAACATTAGAGGAAGTGGCTTCTGCCAAGCAGTCCGTAAAGTACATACAGAGCACAGGTTCCTCTGATGATTCTGCTCTAGCACTGTTGGCAGATATTACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTAAAGAAGATGGCTGTCCATCTGACCCCACGAGCAAACAG
Seq A exon
GTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAG
Seq C2 exon
GAGCACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAACGATATCTTCGAGAGAGCGCATGGAAACAGCACCTAAATTGTTACCACCTTGAAGAAGGTGGAGTCAGTAAGAAGCAAAGAACTGGGAAAAAAATTCATGTATGTCAGTACTGTGAGAAACAGTTTGACCATTTTGGACATTTTAAAGAACATCTTCGAAAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-ZNF131:NM_003432:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=2.2),PF0009621=zf-C2H2=WD(100=10.0),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGCAGTCCGTAAAGTACA
R:
TTAGGTGCTGTTTCCATGCGC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)