BtaINT0164911 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015504 | ZNF131
Description
Bos taurus zinc finger protein 131 (ZNF131), mRNA. [Source:RefSeq mRNA;Acc:NM_001101218]
Coordinates
chr20:31571710-31572397:+
Coord C1 exon
chr20:31571710-31572072
Coord A exon
chr20:31572073-31572174
Coord C2 exon
chr20:31572175-31572397
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
AATTGTTTTACCATTTTAAGGAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
AGAAACAAAGAAAACTCAGCTCCACTAGAGGAAAATACCACAGGGAAAAGTGAAGCAAAAAAAAGAAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCGTTGCCATCTGCAGAATCTGAACCTGTTGAAATTGAGGTGGAGATTGCTGAAGGCACAATCGAAGTGGAAGATGAAGGCATCGAAACGTTGGAGGAAGTGGCTTCTGCCAAGCAGTCCATAAAGTACATTCAGAGCACAGGTTCCTCTGATGATTCTGCTCTGGCATTGTTGGCAGATATTACCAGCAAGTACCGCCAAGGCGATAGAAAAGGACAGATTAAAGATGAAGACGGCTGTGCATCTGACCCCACAAGCAAACAG
Seq A exon
GTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAG
Seq C2 exon
GAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGGGAGAGCGCGTGGAAACAGCACCTCAGTTGTTACCACCTTGAAGAAGGTGGAGTCAGTAAGAAGCAGAGAACTGGGAAAAAAATACACATATGTCAGTACTGTGAGAAGCAGTTTGACCACTTTGGACATTTTAAAGAGCATCTTCGAAAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015504:ENSBTAT00000038149:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTTGGAGGAAGTGGCTTC
R:
GCGCTCTCCCGAAGATACCTT
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]