BtaALTD0024690-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015504 | ZNF131
Description
Bos taurus zinc finger protein 131 (ZNF131), mRNA. [Source:RefSeq mRNA;Acc:NM_001101218]
Coordinates
chr20:31571972-31572397:+
Coord C1 exon
chr20:31571972-31572072
Coord A exon
chr20:31572073-31572079
Coord C2 exon
chr20:31572175-31572397
Length
7 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
AATTGTTTTACCATTTTAAGGAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
TGGCATTGTTGGCAGATATTACCAGCAAGTACCGCCAAGGCGATAGAAAAGGACAGATTAAAGATGAAGACGGCTGTGCATCTGACCCCACAAGCAAACAG
Seq A exon
GTAGAAG
Seq C2 exon
GAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGGGAGAGCGCGTGGAAACAGCACCTCAGTTGTTACCACCTTGAAGAAGGTGGAGTCAGTAAGAAGCAGAGAACTGGGAAAAAAATACACATATGTCAGTACTGTGAGAAGCAGTTTGACCACTTTGGACATTTTAAAGAGCATCTTCGAAAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015504-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCATCTGACCCCACAAG
R:
GCGCTCTCCCGAAGATACCTT
Band lengths:
102-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development