GgaINT0062169 @ galGal3
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
NA
Coordinates
chrZ:65169247-65173882:-
Coord C1 exon
chrZ:65173703-65173882
Coord A exon
chrZ:65169427-65173702
Coord C2 exon
chrZ:65169247-65169426
Length
4276 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ATATTTTTTTCCCTTTGCAGTTC
3' ss Score
11.19
Exon sequences
Seq C1 exon
TTGTTCACTGCCCTGAATTGAAGCCCCCTGAAAATGGTTACTTTGTCCAGAATGTCTGCAACAATTACTTCAATGCTGCCTGTGGGATCCGATGCAAAGCAGGATTTGATCTGGTGGGAAGCAGTATCCGGCTTTGTCAGCCGAATGGCCAGTGGTCTGGATCAGAGGCTACTTGCAGAG
Seq A exon
GTATGGATGTGTGCTTGCAAAGTCTTCTCCTGCAAGGTTAGTTTATTCTTAACAGTGGGTTACTCTGCTCATTACAAAGCAGGCTGTGCAGATCTGCATCTATTACCTCTTAGGTGAAAGAATGTTCTAAATGCCAAGTTCCACCCCAGTCATGTTGGCAACCTCCTTTCTGCTGGGTGTGGGTGCATGATTTTCCTTTAACTGGGAAACTGTTTGAAAACTGAGGGAAAATCTGCCTTGAGATATTGTCTTGATATTGAGTCAGTTTCCTTTGGAGTGTTGGAAGAGTATATTTATGCCTTTCTTGTGTGTCTCCGTTTCCTGAAGACTTCCCATTAAATACATTACGAAATCCTACATTTACATGTGCTGGATCTGTTCGTCTCCATTCACTCAGAGTATAAAAGAGAGTGAGATCAAAGTCACAGTTTATAGCTGTCTTGTTAATCCCAGGAGTATTTTATTGCATAAATTAGGAAGGGACGTTGAAGGAAAATCCCTTGGAACTGCTTTGAATTTTGACATTAAACGTTCCTCAGTTGCTAGCTAAAATCCGCTCTGCTATTGGAAAGCAGTTAATGCAGTTGTGTTTTGCAACTTACTGTGACCCATGAAAAAAAGCCCTACAGAGTATGTATATAATCCAGAAAAAATGTGTTAGGAGAAAACACAGAGCAAGCAGAATATGCTATTGTTGTTGTTTTCATTGACATTATGGAAATACTCCTTGATCCTGGAAAGTGCCTAGTTGACAAGATTAGTTTGCGTTTAAGACATGAAACCATGACCAGAATAACATGGGCTCAGCTCCCAGTTTTCACCAGGGGTATTCTGTATTACCAAAGAAATGTGAGCACTGAAACACTGAGGAGACAGGAGCACTGCAGTTACACAGTCTATCAGAAGAGATGACGAGATTTAACAGGTGATGGAAAGGAGTTGGGGAGTGCCTGCCCTATAGGCATTAACATTGTTGATTACCTCCTTAGTGCTCATAATTTGTTCTGGCTTCATCAGTAATAACCACAGCTTGGTAGTACTTGCTTCCTCTAGAAAGGCTTCCAGGGAAGCCATGAAAGAGAGAGCCTCTTCTGCATAAAGCATATATGATTCGGCTTTTAAATGTCTTTCTTATTCACTGCAGTGCAGTTAGGATACAGCTTATTAGAAAGCTGCTCAGAAGCTCTAATTGTCACTAGCCAGATGAAAGTCTTAAGATCTTTTTTTTATGCTCTTGAATGCACTTTCTGGTGAGTGTCTCTGTATACTTGTGTGCATGAGGAGTAATATTTTCAAAGTGTGAAGAGAAACAGTGGTAACAGAAAGATGTGTCAGATGTATCTGAGTGACTTTTTTTTTTCTTTTTTTCATATCCAGGGTACCTGCATTCTGCTGCTCTCAGCTTCCCCTATTGCTTTTTCTACACACATAAGTCCATGTTGCATTTTTTGTACTGTTGAGGAGTTTGTAGCTATTGCCATTTTGTACAGGTGATTTCATTTTAAAGAGCACTCACGGATACCGGCCCTGGTTATTTAGTTTTGGCGGAGTATCATGGTTCTAGTCAGGCCCACTATGGCATGTTTTACCTTGGAGGCCTTGTCCTGGTCCTCCTCCAGATTATTAACCNNNNNNNNNNCTGTCTCATCAGTATTAACAGTAAACAACTACTAGGAAGAGGAGAGAAAGTTGCGAAGTTGGCTTACTTTCAATTGCATTTGGAGAGGAGTTTGTGGTTTGCCTCCTACCAAGCAGCAGCAAGGATGGTTTTCCTGGTAAAATCTGCATTCCAAGAAGACAGAGAAGTCATCCACAGCTCTGAAGTTGTACATCATCAGAGCTTGTCCATCACCTGCAAGTCAACAGAAACTGTGGAAACAGTCCTAGAAAAACAACAGTGTAGGGAGCTGCAGCCTTCTTGACTATATTTTTGAGTGATCATGCTGTTTACCCTTGTGTATCTTTTACTCCCAGTAAAGACTTTTGAACATACTGACCAACACCCAGTGGCTTTGGCTGAGAACACTTTTCAGTGATACATGTTTTCCATAGGATTTGGGAAATCTGCAGCTGCTTAGGGAAGAGAGGCTTGAATTACTGAGGAAAAAGATGCAGTAGGACCCCAACAGGCATCTACACATTTCAGCTTGCTGTCACTGTGTCATCACGTATATGAAATCATCACATAAATCTGTACAGCTTAAGTGTTTGAGAGAGGTGGACGCAAAACCAGGCAGGATGTATGCTGAGAGGGTCACAAGGGAACCAAGTGAGGAATGTCAGATACTGGCTGGAGAGGAGAAGGGCTGGAGGCAGTGCATAAGAACACAGTCTTACTAGAAGAACTTAAGATGGTGAAACAAAGGAAATAAATTAAAGCATTACCAGCACTACTGATTTTTTATTATTATTATTACCACTTGCCTCTTCAGGGATAAATCTGCAGTGTTACACTGTGTTAAACAGCAGCACTAGGATTCAGTAACAAAATCATAAGACATTCTGAGGGTCATTTGTCATACCCCACTTCCTCTTCTGCACACATACCCTGCGCAGTATAGCCTTCTTCTTGGCATGATGCTTCTTACAGTGTTTGAGAGGTGAGGCAGGAGAAAGGTCTCTGTGCACGGCAGCAGTCAGGGCTGCTCTGCTGGAAGCCCCACACTGGGAGAGATCTGTTTTGTCTCAGCAACAGCCTGAGTTGTGCCTTTTCTTCTCTCATGGTCCTGTTGACCATGAGTGCCTTGTCTTCCTTCTTCCGCTCTCTGTCATCCCATGAAGCATGTCCACTAATCTGATGTGTGGAGTTTGACACTAATTTGTGCCTGCATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCTTTTTTCTTCTCTCTCCATGGTCCTGTTGAACCATGAGGTGCCCTTGTCTTCCCTTCTTCCCGCTCTCCTGTCTTACCATGAAGCATGTCCACTAATCTGATGTGTGGAGTTTGACACTAATTTGTGCCTGCATCAATAAACTGAGCAGTGCCTGCGCATGTTCTCAAGCCCTGGGATGCAGTCATCTGCCTTATTAAGCTCTTAGCCTCTTCTGTGACATGCCTTCAGTCCATACTAGACTGCCAGTTAGAAATTTTCCAAACTCTCAGGCATGGCTGAGGAATTAGAAACATCTGAAGGCCCAAACTTTTCTACAGGATTGAATTTGCATGCAGTCATGCCATCTTGAGGGCTTACAGACTTTACTATCGCAGGTTGCGCAGTACTAAGTGTCCAAAGGCTGGGAACTCCTCTGAGCACAGTTAAAATGATAGCCTTATGTCAGAATTCAGGTCAGTGTGTGCCTAACGTCATATGTGCTAAGACTCTCCTTCAAGAAAAGTAAGGCATTAATCCGTTGAAAAACTTCTTCCAGCCCTATTCTGTAAATCTGTTCCAACTACTGTAGTAGGTGTACAACCCAGTATCTGTCCAGTCCCTTAAAACCTGAATGGGCTAGAGTTGCTCCCCAGATTCTCAGTGCTGCTGAGTGAAATGATATTTTTTTCCCTTTGCAG
Seq C2 exon
TTCGAACATGTCCCAAGCTTTGGGCTCCTGAGAATGGACACATTAATTGTTCAACAGCTGATATCTCCTATAAGACGGAATGTTTTGTGACCTGCAATGAAGGCTATAAACTAGAAGGAAATGCCAAACTGACCTGCCAGGGAACCTCACAGTGGGATTCCAAGGAGCCCAAGTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]