RnoINT0146355 @ rn6
Intron Retention
Gene
ENSRNOG00000033110 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:RGD Symbol;Acc:1588987]
Coordinates
chr5:75247483-75254311:-
Coord C1 exon
chr5:75254132-75254311
Coord A exon
chr5:75247663-75254131
Coord C2 exon
chr5:75247483-75247662
Length
6469 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ACTGTTGACATTTTCTACAGTGA
3' ss Score
6.32
Exon sequences
Seq C1 exon
TTGTCCACTGTCCTGCACTGAAACCTCCTGAAAATGGTTTCTTTATACAAAACACTTGCAAAAACCACTTCAATGCTGCCTGTGGGGTCCGATGTCGCCCTGGATTTGACCTCGTGGGAAGCAGTATCCATTTGTGTCAACCCAATGGTTTGTGGTCTGGGACAGAAAGCTTCTGCAGAG
Seq A exon
GTATGGAGTCTGGCTAGTTTTTGTTGCTTCTTAGCAGTCTCGCTTCACATTCAGTATTTAAAGTCTAATGGGCTAGTCAGCCATTTGTTGATTTTCTGATCTCAGAGATCATATTCCTAAGAAGCGAGAGTTGTAGGAAGGTTGAGAATTGCTAAGTTTCACTGACCTCAGCATTACAAACCATGTCATCCATATTCCTTCCGTGATGGCTGTCTAGAGCACCAATTCTCAGCCTGTGGGTCATGACTGCTTTAGGGGCCAGATATCAGATATCCTGGCTATCAGAAATTTGCATTGCGATTCATAACAGTAGCAAAATTACAGTTGTGCAGTAACAACAAAAAATAATTTTATGGTTGGAGTCACCACAACATGAGGAACCGTATAAAAGGATCGAAGCATTAGGAAGGTAGAGAGGTAAATGGGTGGGTTACTCAAATTACTATACAGGTAACAAGAACGTTAGGTCAGGCCACAGGCTCTGGGATAGTCAGAATTCTACCATGAGACATGAGTCATGCCAGAGCCCTTCAATGGAAGCGCCTCAACTCAATCGTCCCCAGCTATAGAAAGTGGAGAATTTATTCTGCTAAGAGCCCAAGGAGCTAAGTCAAGGCAGCAAGAAAGAAGGTGGGAACAGCAGTGGAAGCATGGCTTCCACATCAAAGACAGCATAGTATCTCAGGTCGCTCCTATTTGGCTGTCTCCATTATGAGTTCCTAGTACTTACAACCACACAGACCAACCTCCAAAGGCTTCACAAGGGAAGGAGGAGGCTTCCCAAGGGAAGACGAGAGCAAGCCAAGGACTTGAGGATCTCCAACAGCTTGGCTCAAGACTGTGCTGTATAGATTTGACATATAGGTATATGTAAAATTTAATAATTGGTTTTTTGAAGTTCAAACTTAGTTGAACATCATCTCAGTGGATTGGTTTGTTGTTCATTACTAAACCTGCAGCCATGCTCTCTCCATGGACAACGGTCTTTGCTGAAGAGTTAATTTCTCCAAGACTCCATAACTCACCCAGATCTCTAGGCAAAAGATGGTGTCTCCTGGGAACCTGAGCTTCTATATCCATAGGGAAAGCTCATTGATCCTCTCTTTCAAGAGCATTTCAAAGTTCCACAGATGCCCATTGTCTGTGTTTATTGGCCACTGAAATCGAACCCAGTAGAAAACAGGAAGCTGTGCAAATCAGATCTCTGATGTGTATCCTACAAAAAGTCAAGGAGAAACCATGGCCAGAGGGTTGAACAAAATGACTGGCAGGGAAGTTTGGAAAAGTAAACGGGTGAGCCTCAAAGGCAAATGCAATGATAAAGTAAAAGTGGGACTCCAAAGACTTGAGGGGAAGTCTAAGAGCAATGAGATTCCTTAATACAGGGGTGGGGGTGGGGGGATTTCAAGACTATTCACACAATGAAAACATAGTGGAAACCCAAATTAATAAACTGAAAAATGTAACCTGAGAAATTCCCTTGAAGGTAGAGGATAATTTCAAAGATAAAGAAATTCTGAGGGAAAAAAATGATGTGGCAGAAAAATAGCCACTAGAAATATTCCTCTCTTGTTATGAATTCAGAGAGTGAGCAGTAACAGAAGATCAAAGTCTATCACCCCAAGGTGAAATCTTGAAAATAAATATGCACAACACAAACCTTTGGATCTGCCTTAAAATCAGTTAGTGGATGCCAGAAAAAAATATTAAAAACAGACCGGTGTCTGGAAATAATCTTAGCAACATAATCTGAATTCCCCAGAAAAACACAAAATAGCATTGACTTCCTAGTAACAAATAACATTACCTCCAAGAGGCTCCGGTTAGCCCGAGGCTGTTTACTGGACACACAAAATGTCTGAAGAATATATTTCTAGGATTCTGAGAGAAAAATACTTAGAATATCTGCAGTCTCACACCCACTGTTGTAGGGTGAGGGTGAAGGAAGGTCATTTTCTGTCAACCGGTAAAAGCCGCACATCCTTCCTGAAGCAATTGTTCTGACCACATCTGAAACATTTTCCTTGGAGCCACCAGTTCTGGCAGCTGCCAGCTCCATGGGAAATGGCTATTCCTTCCTGCATAGTGGGCAGGGAAGACACAACACTTTAACTCTCTACCTGTGACTTTACAAAGAAGAGTGGAGCGATCAGTCCGCTGTCCCTTCGGAGAAAGGTCCTGACCCTGCCTCCCTGCTTTTTAGATCTAAACCCAAACCTTCTGTCCTACACTAACAGCCATAAAGGTCCATAGTACCTCTCTGAAAGCTTTGTTTGCAAGCCTTGTCTCAGGCCTTTGATCTTCCTCTGCCTAAGCCCTCACCCCTGGCCAGCCTCCTCAGTCTGAGAGGCGTGGCCCTGGAGTGCTCACTACAGCCCCCCATCATTCCAGCCCTAGGCTGTGTCAGGCTCACTCAAGGAAGCATGTGTGTTACTGGGTTAGGGATTTATTTTGGAGGTCAAACCCTATACAATTTGGGAAGGAAATTGAAGTAGAGAGCCCAGAAGATAAGTCGGAACATCAGAATCCCCCAAGACTCGATCTGAGATCCCAGGCCTGTCAAGCTTCAGAGATGGAAGCCACCAGTTACACTCAAAACATTCTGGGGTTGGGGATTTAGCTCAGTGGGTAGAGCGCTTGCCTAGCAAGCGCAAGGTCCTGAGTTCGGTCCCCAACTCCGAAAAAAAAGAAAAGGAAAAAAAAAAACATTCTGTGTAATCTAAGAAAGCCTTGCCCTCTATGTAGCCATGCCCCTGTGACTCTGTAGCCAGAAGTGGACATGGGCCACCATCAGTCACCATGATTATCTATGAGGATGTAGAGACAAGTAGGGACAAGTTGGAAGGCACTGGGCCTCCATACATTTGTCCATCACCGAACCTGACTACAGTGACCACTGCAACTCTTCTGTCTCCCAAAGCGAGTGTGGGCTTCTCTTCTGAGCAAGCCTGACCTGGGATCACAGTAAGAATTCTGACCAACATATTTCTAGCTTGACCAACCTCTTACACTAGCAGCTACCACAGTCATCTGCACTGCTGATTAACTGTTAGACTGTTACTATACACTGCTAATATAGACTTAATGTAGAATTTATTTTTTCCTCCCCTCTCTCCCAAGTTATAACTCCAGCAAACGAAAAATTTCAACTTGACGGAGACGCATACTGATAAGCACACATTGTACAACAATAGACATATATTCAGAGGTCTGAGTGAATCACCCATTAAAATAAAAAACTCTCTTTTATGTGACTTCAGTCGCTATTCTGCTTTAGACATTGTGATCACAAGTGGGAAGATTTGACAAGACCATGGATTGTCCTAAAATTCCGGCAGCTTCACTACCGAGTCACCGCTTAAATCACCTTTAAGTAGACTTGTCCTGAGTGAAGGCTTGGGTCCTTCCTGTCCCACATTGTCAGTGCCTTCTGGGTTTACTTGAGATCCAATAAAACAAAACGTATACTATATATCACCAAAGCCAAAGGGTATATTTCTTTTTTGTGTCTGTAAAATCAGGATGCACCTTGAAAGCAGCAGCAAAAAGCAAGTTCACGGGCACAGCTGTGGCTTTAGCAGTGGCTCATAAATAACGGTGGGTCTGGGACACTGAGATGTTTTGGTTGGGCAAGGCTGGCTTCTGTTCCTGAGGAAGAGGTATGTCGACATAGTATTTTATAGGTGTGATATAAGGGGCAGAGAGTAATTTTAATTATGTCGTAGTTTTTATAAAAATATAAGATGGAGTCAGGAAAGAATCACTAGGGAAAATTCCTTGTCTTTGGGCTACACTATCAATATTATGTAACGTTGGCTTCCTTCTTGTTCCTCTTTGTGGAGCACTCATTCCTCTTCATAAAGCACTCACACTCATTTTTTTTTAATTTTCTTTGAATTATGTGTCTCATTCTAAACCACAAAGGGAGGCTTTGGTTGTGCCTCAGGGACAACTAGCTAAAACCCAGCAGCACAGAAAATTAAATCCTGGGATACTAGGTGTTTCCTGAGGAAAAGTTTCAACAGCAAGATGCCTGTTAACATCAGATGCTCTCTGTTTCCAGTGATAGACAAAAGTCACAAATTGGACATTTACAGGAAATGTATATCAGGAGAAAAAAAAAAAACAATTCACCTTTAAGACGAGACCTACTGCATGTTTGTAGGCCTGCCGTTGTCTATGTTATATAATAGATGGTTCTCTTATAGCACAAGACTGGGCTCCTGCTTCAGTCATCTTTCTAAATTACTCATGGTTGCACAACCTGCTCATAATAATTGTATGCAATTTTATGGAGTAGAGTGAGTCAATACATGTATACAATGAGGGTCAACTAGGGTAAGCTGCTGTTGTCTAAATTAACCATAGGAATGTCTCTGAAACAAATGTAAATTGAGAAACAAAAAAACAATTGTGAGCCGAATCTAGTAATTAAATGTCATAATATGAAAAAATGTCAATAAACACCTGCTCTTGAATGAAGAGTATAAAAACGTTTAAGAAATAAATAGAAATGACTGCTCTTGATTTGCTTTCCCTGAGGAACAATAGAAGGTTATTTAAAAGCCAACGTTTGAGAAGCGATACAGCTCGTATCTGTGACGCCAGCTCTAATTTGCCCTGAGTACTCAGGAGAGATGCTACAAATCCAGTTCATCTTGGCTTTGGAAAGCTGGGGTTTGGTTGTTTTGGGGGTTTTTTTTTGAGTTTTTTTTTTAACTGAAGCTAAAAGCAGTTGCCTGGTGTGATTTTCTATTTTATATATCTCAATCATAGAAATTTATTTCGCTCGCCTTTTAAACCAACCCAGCAGTAAGCATGACACCCTGCGTAGTGGTCACATTCAGTGACAGTCCTGTGTGGCAGGCAGAGTCTTTTGATAAGCATTTTATTGCTAATTGCCTTCAGCCCAAATTGTCCCAGCCATGGCAAAGGACAGGGTTTCATATTTATCCTCTCACTTAATTCTTGAGTTTCCTCTATGGGGTAATAAATCTGAAACATATTTAATTCACTGAATATTTATGCCCTGTCAACTGATGTAACTTGAATGAGTTCCCACAAAATAAATTCTGCCAGTAACCAGTAGATATATGTATAAGCTTGAATATTTTTCGTGAGTTTTCTTTCCTATTTTTTAAAGGTTTCAAAATAAACAAATACACAGTCTTGCTATTAAAATAAAACTGGCTCGTGCATAAACGCACCGCGAGAGTCCTCCCAATAGTCTTGATTTCCAAATGCCATGTTGAGGATCCTTTGGGGACTGCTCTTCAGTCTTCTGCCTTGAAGTGCTTCACGGTGCTGTCTGCAGTCCAGCTGAGCATGGCTCTTTCGTAGGGTCTTTTTGTTTGTCCTTTGTTCAGTATCTTTCCCTAAAGAACTGATGAAGGAAATGCTTGGTTGCTGCATTGAAAGAATTCGACTTATACATCGACTTATACGTCCTGGTATCAACATTCCAAATACCGATACCTCGAGACTCAAGGGTTTTTCTCTCATCTAAAAGGAGGATGGCGTAGACGGCCCAGAGCAGGTGGAAGAATCCCATCGGCACCGGATACTAAGGCTTCTTTAGTGCTTCTGTGCCGTCATCATAATGCATGGTACTTTTCCTACGGTGCTGGTAAATGTGCAGCAGGATGCTGGCATCGCTTCTATGGGGAAAAGGGAGGAGAGAGGGAAGACAGAATAGCACCCCATCAACTGGGAAAAAATCTCACTTAAATTCAGCTGTATCTTGTTGGCACTTGTTAGCTGCAGTGGAGTTGGGGAACAATGACTGGCACATTATGAATGCTGGGTTATGCTGGGAAGAATTGGCTGCTGGGTGGGTAATTCACAGGCTCTGCTACAGCACCTGGAAACAAGCTATACTATTACATTAATGCAGATAGACAGTAAGAATGGGGTTTTGCAGGGAGTGTGTGAGAAGAAAGGAGAGAGAACACTGGGAGGATTAGAGTGACTATCAGAAAGTAGGATACTAAACTTTAGATGGCAGGAAGTGGACAGGTTTGCCCAAGCTGTGACTATTGAAGAGCCCAGGGTGTATCTTGGAGGTCTAAGAACTGAGTTGATCTTCAGCTTGAAACTTCTATCCTAGAAAAAGAAAAGCACTTCCTTTTGTTGGAACATAGCCTGGAAAGTCCCAGCAAAGGCCCAGCGGAGGGCTGGCTGCAGGTACTTCTGTCTAGGAGCCACCCCGGTCTATAGCTGTCCTCATCTACTCAGAGTTAGATGCCACACACCATTTAAATTCCCCACGATTGCACTGGAGGCTGCGTATCATAGTAGATAAGATTACAGATTGATAAGAGCCCCGCAAGTTTAAAAACGAGGGCATGTTATGTATCTCTTGACACATAAGGACAGAAAATTGTCCTGTTCATAACACAAAGCCATTATTAAAGTAAAGTTCCACTTCTGTCTACATTTAGTAAAATGTAACTGTTGACATTTTCTACAG
Seq C2 exon
TGAGAACATGTCCCCATCTCCGACAGCCCAAACACGGCCACATCAGCTGCTCCACTGTGGAAATGTCCTACAACACTGTGTGTTTGGTTACCTGCAATGAAGGATACAGATTAGAAGGACATGCTAAGCTTACCTGTCAAGGAAATGCCCAGTGGGATGGCACAGAGCCGCGGTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033110:ENSRNOT00000047200:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(5.6=1.6),PF0008415=Sushi=WD(100=91.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]