HsaINT0162186 @ hg38
Intron Retention
Gene
ENSG00000165124 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr9:110503038-110513105:-
Coord C1 exon
chr9:110512926-110513105
Coord A exon
chr9:110503218-110512925
Coord C2 exon
chr9:110503038-110503217
Length
9708 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
ATTGCTTTCATTTTACATAGTAA
3' ss Score
5.05
Exon sequences
Seq C1 exon
TTGTCCACTGCCCTGCCCTGAAGCCTCCCGAAAATGGTTACTTTATCCAAAACACTTGCAACAACCACTTCAATGCAGCCTGTGGGGTCCGATGTCACCCTGGATTTGATCTTGTGGGAAGCAGCATCATCTTATGTCTACCCAATGGTTTGTGGTCCGGTTCAGAGAGCTACTGCAGAG
Seq A exon
GTATGCAAACTGCCAATTTACATTGTTTATTTACTGTCTTGCCTGATTTCCTTGATTTAAACTCTAGTAAACCAGTCAGTTCTTCATTTCTTTTTGGATTTCATAGACCCCATACTACAGAAAGAGAAAAATTATAGGAAATTTGAAATCAGAATTACCAAGTTCAATTGACCACATAATTGTAAACTACGCCTTTTATAGCCCTTTTATGAACAAGCAAAGAAAAAGTTTGCCTGGGAAGTAAATGGACAGGTTACCCCAAACCTCAAATTTCAAGCCTCTAAGACATGATATAAAGGAGAGTTTAGAATAATCAGAGTGGAGACTGATGCCTCTTGGAATTGTAGGACTTAAGGAATCACACAAGTATCCTGCAACAAGAGCAGTTAGCCAACTTGTAATCTCCAGCCTTTACTTCGGCTAGTCGACCCGTTATAGAAAGTAGAGAATTTGTCAAAGCGAGAGTCCAAGGAGCCTATTCAGGCCAATAGAAAGTGGGCACCACCAATGGAATCTGAGGCTCCCATGTCAAATACAGAGAAGCAATAAAAAAAAAAAAATAGTGCCTCAATCTGCCTCAACTTGCCAACTCCAGGACCTACTTTCCTACTTCTTACAACTGTCACACAACCAACTTCCTAGGGTTTTACAAGTAGGGTTAGAAGAGGAGGATATTTAAGAAAAGGTAAAAGGGGGGCGAGCAAAGGGACTTGAGGACCTCCATCAGAATCCCTGCCCACAAAGCTTCTCAGTACAGTACCTGCTCCCTACCTACGGTTGCCAGTTGAAACACAGGATGCCAGTTAAATTTGAATTTTTGATAAATAATATTTTAGTATATGTGGGTCCCCTGCAAGATTTGGAACCTCCTTATACTAAAAAATTATTTGTTGATTTTCTGAAATTTAAATTTAACTGGGCGTGCTGGTTCATTGGTTTGTTTGTTGCTAAATCTGGCAACTTTACTCCCACCACATCCACTAGTCATTTTTTGGCAGAACACTTTGCTGAGGATTTGACTACTCCAAAACCCCACAAATCAGCTGGACCACTGGTTAAAGATTAGTTCTGTCTTCTGGTCTTTTCTTGGCATCCATATCCATAAGGGAGAACCACCTACTCATGACTCCAAGATCATTTGTGAATCCCAGGAGACATCTATGTTGGTACCAATTTATTAGGTACCAATACTGAACTCATCTATAAATGTAAATTGGCCTACATGGTATCCCCAAAAGACAAGGAAAACTGAAAACGATCAGCAGATTGAACAAAAGAGACCTGACAGAAAAGAAAGAAAAATGGAATCACTGAGATTCAAAGGCAACTACATTGCTAAAATAAGGCCAGGATTCCAAGCAATGAAAGAAATTTGAGAGGAAAAATATGTATTAGAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTACTGACACAATGAATGGACCTAGTTAGAAGTCAAATTAATAAATTAGAAAACTAACTCAAGAAATTCATTTGAAGGTCAATCAAAAAAATCCAAAAATAAAAATATGAAAGAATAAAGTAACATGAGAATAGTCACAGGAAATAGACTCTTTTCACGTGAGGAATCCAGAGAGAGAACAGAATGGAGGAGATGCACCAGTAGAAGATCTAAAGATATATCCCTGAGCTGAAATTTTGAAAATACTCACAACCCAAATCTTGGATATTCAGTTTAAAATCACTTAGTAAGTGCCACAAAAAAAATATTAAAAACAGATTTATGTCGGGAAATAATCTTAGTGAATTTTCTGAATGCCCTAGAAAAACAGAAAACTGTGTCCATTTCATAGTTAGAAACAACACTACCTACCAAGGAGAAAGAATCAGATTAGCCTTAGGCCCCTTTGTTGGCCATTCTCAATGTTAGAAAATAAGACTGTGTTGCCAGGATTCTGAGGGAAAAGAATAGACCCTAGATTTCTAAACTCAGGCAAGCTACTGTTCATGTGTGAAGGCAAAGGAAAGACATTTTCAGTCATGCAGCCTCAAGTGGTAAAAAGCCACATACCATTACTGAAAAAATGAATCCTTGAAAGCTTGTAAAATATATTTTCGTGAAGTCAATAGTTCTAAGTTCTGTGTAAAATCTTTACCCCTTCTTCCAAATACCTTACGGTAGAGGATGGGAAATATTACATTTTAACTTGCCACTCAGTAGCCTTCCAAAGAGGAGTGAGAAAATCAGAGAAGACTGCCCTTTCAGGATAAGGTCTGGCCCCTGCCTCTCAAGCCTGCACCCTCCATAATCAAGCCTCGCGTCTGATCCTAAAGCTGTAAGAAATAGCCATGCTCTCTCAGGAAGCCGGCCCTTTGAAGCTGTTCCCACAGCCTGGCTCTGCCTTTGCTCTGGGTCCTCTCAACCCTCCACTGTTGCCAACTTCCTCCTCCTGAATGGGGTGACCTCTACACGTGCATCTGTGCATCTGCAGACCTGCCCCCACCCCTCATTATGTTTCTTATGCTATGTGTCAGGGTCAGTCAAGGAAGCACAGTCACCATGCATGTTATGGGATGAAGGATTTATTTCAGGGAATAGAGCTTACACAATTTTAGAAGGAGCTTGGAAACAGAAGAGGAGTGGGAGGATCAGAGGAGTTCTTGACAAGTCAACTTGAGAGGCTACCCAGCTTTTGAAGTGGAATTGCTAAGGAGAAACTCATGGAAGGTCTAAGAGAAGCTTTACCTCTGTGTAGTTATGCCCCTGTGGCTCTGCAGCCAAGAACCTTGCAATGAACATGGGGCCACCACTGGTCATGGGATCAGCAGTGAGGACGTGGAATGGAGGCAAGCAAGGGCAAGCTGGAACCCCCTGGGCATCACTGCATTTTTCTATCACTGACTCTGATGACAATGACCACTTCCTCACTTCTGCCTTCCAAAATCAAGTGCAAGTTCCTCTTTTGATCAACCCTAACTTGGAACCACAATAAAGGGATTCTGGCAAACATATTTCCCAATGTAACTAACTTGTCACAATACAAAGCATCACACTTTTATTGGTAATTAACTTGTCTACCTCCTCTGCTAAACCAAATTCATTATGAGCACAGAATTTATTTCTGCCCCTCAATCATTGATGATATCTCTGGTGAATGAATGGAAACTTGAAGTTAACAAATACACATATCGATAAATGTATACGTTGATGTACATTGATAACTACAGTATATACATTGATGACCTGCTTCTGTCACTTCATATTAAAAACCATGCATGGGTGTGATGGCACAAGCTTGTAATCCCAGCTACTTAGGAGACTGAGGCAGCAGGGTCACTTGAACACAGGAGTTGGAGGCTGCAGTGAGCCATCATCACACAACTGTACTCCAGCGTGGGTGATAGATTGAGACCTTGACTACAAAAAAGCATGCTTGTTCTCTTTTATGTAATTTCAATTGCAATTCCAATATAAATAAAATAATTTAAAGCAGAGTAAGGAGAGATGCTACAATTCAACTTCACCACCAAAGCTACAGCTAACTTACCAGTATACAAAGTTGTACTGAATGAAGGTACTTACCCAGGCCCTTACACTTTCACTAATGCTCAGTGTATTTAGTTACATCAGATATTGTTCTATGAAACGCATACCATATTTCACTAAATCTGAAACACATGCCATATTTCACTAAATCTGAAACACATTTTTTAAAACATTTTAACATCTCTAAAATGGAGATGCATCTTAAAATCAGTTGCAGCAAACCCTTTAATTGGCATTATTGTTTCTTTGTTAGTGGCACATAAAATAATGTTGTGTCTTACAATGGGGATTCAATGAAATATGGCCGTTGGGTAGGATTTCATGTCTGTTTCATGGTGGGTAGTATGGAGAAAGTAGTATATTTTTACAGATTTAATTATAAGAACAGTGAATAATTTTAGTTATATTATACTTTCTCAAAAATATGTGTAAGATTGAGGCAGAAATGAAAGACCTGCATAAAATCTAAAGCCTTTTACAAATATCATGTTACATTGTTAATGTTTTTGTGGATGTTGACTAATAATTGGTAAACTTGATTCTCACTTCTCCTATGCACTTTTCATAAAGCACTTATACTCATTTTCAGTTTTATCTGAATTCTGCATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTACCTAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGTCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTCGCCAGGATGGTCTCAATCTCCTGACCTCATGATCCACCCGCCTCAGCCTCCCAAAGTGCCGGGATTACAGGCGTGAGCCACCGCACCCGGCCAGAATTCTGCATTTCTTTCTAAACAGGAAAGGATTCTTTTGTGGTTTCTCAATCTTAACTAACTAAACCTGAGTAAAAAGGTTCAACCAATGAGAACCTTACATTTAACATCAGATTTATTTTATTTTCAGTAATAGATATCACAATTTGGAGACTAATAGGAAGCACGTGCCTGGAAAAAAAAAAATCTGATTAGTCTTTAAGATGGGAACCAGAGTAGCTTCTTATATTGTCTACTACAAGTAGACTTTTCTCTTAAAAGTCTAAGTTGCTATTTTCTAAAAAGACCAAATAAATATTTAGGAATTGTGATAACATAAATGTAAGTCAAGAAATATTAATTGCAGGATTTTTCGGCATGTTGAAATGAAAAAAATATAAGTTGAAAATTCTTTAAGAAGTGTGTACCTATTAAAATGGTATTAAGTGTTCATTCTTGAGTGAAATGTTTAAGGAATAAATAGGAATTATTGCATATGTTTTGTTTTCAGTGGGGAGCAATGGAAGTTTATTAATACCAACATCTGAGAAGCAGTATAATTTGCATCTATATGAGGCACCGACTCTAATTTATTATCAGTAATAAATCCATTTTGTCTCAGGTTAGGAAAGCTGGAGTCATCTTGGCAGTTTGTTGAAGCCAAAACATTGTTTAATATGGTTTTCCAAATTTTATACATCAGAATTTATCTGATTCACCTTTTAATCCCACCTCATACTTTGCCTTGGGATACACATGAAGGACACACTCAATAAAAGTCAAAATGCAGAAGACAAGATGTTTCATGCACTTGATAGACACAATAAAGATTCTATTTGCATAAATGGGCACATTCAGGAAAAATTAAAACACGGAAGGCAAAATGTTTCGGATCATTTTTTATTAATACTTGACTTTGGTCCAAGCCATTCCAGGGATAAAAGAGGCTAGGGTTTATGATCTAATCTCTAATCTAACTCTTGCATTTTCTCTAAGGAGTAATGGATCCTAAACTTTTATTTAATGCACACAATACTTATGCTCTGCTGATTAATATAATTTGAATGGGTTCATTGTAGAATAAATTCAAACAGTGACTTCAATTGAATATGCACTTGAACATTTTGCCCCCAGCTTCCTTTCCTGGTATTTTAAGGTTGTCTTTGACGTAACTAAATGTATGCATGGTATGAACAATTGGCAAATGCAGAAAAGTAGAAGAAGAAAAAATATATCCCACCCGGAGTCTCAACAAAATTCTTGAGTCCCAAATGTTTTGTTCAAAAATCTTTAGAGATTGTTATAAGAGCTCTCTGAGAGGAAACTGAACTTTATTCTTTTGTAGGGGTTATTTCTGTCTTTTGTACGATGTCCAATGCTTGTAGGTTCTATCTATAATCTATCAAGATGAATATACGTCCCCATCATTTGGCATATTTAACAGGCACCGACTCTTTTTTCCTCTCCAATCTCTGTTCGTGAATGGAATGTGCATGCCTTCTGACTGAGAGTGCATTTTCCATGGGTCTTGACAGCTTCCCCATCTTCCTCTTTCTTTTCCCTATTTATTCTTTCCCCTACCCCTACTCCTTTCCTGCTCTGACTTCCCCTTCCCCTCACCCTGCTCTTCCTCTTCTCCTCTCCTCTCCTCTTCATCTCCTCCACCTATGTTTCCCCTCCCTTTCTCTTTCCTTTCTTCTCCCCTCCCTTCTTCACGACTTTTCCTTTCTCCTTTACGCTCCTCCCTCCTTCCCCTGCTTGGAAACCCTGATTGGAGAGAGTCTAAGTTAGAACTAGAGGACAAGAAGTGTAGGACAAGATTATAAACTCTTTCAAGAGGGTTTTCTCTAAAGAGGAGACTACGGAAGATGATAGATCAGAGGCTCCTGGAGGGTGTGGGAACTGATGGATTGAAGCACTTGAAGGAGTGATCCCAGAAGGTAAGAGGTGATTGTCAGAGACTAGGAAACTTGGATTGGTGACAGCGAGGTCTAGAGGGCATGGCAATGGTAGAAGCTGAGATAAGGTGAAGGATATGATCATTAGAAAAGAAGAGATCATTCTGTAGGTTGCCTGTTTACTCTGATGAAAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGGTCCCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGTCATGAGGTCTTTGCCCATGCCTATGTCCTGAGTGGTACTGCCTAGGTTTTCTTCTAGGGTTCACGATAGCAAAGACTTGGAACCAACCCAAATGCCCATTAATGATAGACTGGATACAGAAATTGTGGCACATATGCACCATGAAATACTATGCAGCCATAGAAAAGGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTAACACAAGAACAGAAAACCAAACACTGCATGTTCTCACTCATAAGAGGGAGTTAAACAATGAGAATATATGGACACAGGGAGGGGAACATCACACACTGGAGCCTGTCAGAGGGTTGGGGACTAGGGGAGGGATAACATTAGGAGAAATACTTAATGTAGATGACAGGTTGATGGGTACAGCAAACCACCATAACATGTGTATACCTATGTAACACACCTGCATGTTCTGCACCTGTACCCCAGAACTTAAAAGTATAATAAAAAAAAAAAGAGAGAAAAGAAAATAAGAGATCAGGAATATAACTCCAGGATACTGGAATGATCATTTACATAGATAAGGAAGTCACTAAGGTGTGGGTATATGTGTGTGTGAGAGAAAGAGAGAGAGAAAAAAGAGAAAGGAGAGAGAGAGAGAATTTAAAAAAGGTTATTGGATATATAATATGATACTTCAAAGGAGCTGGAAGTTTTTAGGAAGGAAGGAGAGAGAATGATCTGGGAAGACAATCAGGAGCAACAGAGACACCTCCTCACCTCCAGTCCCTGTTACAGAAGACAATATAATTTTTATTAGGGCAATCAAGTGAAGGAAAAGTTGCTCAAAAGGAAGTTTAGGATATGAGGGGATTAACTGAAACCATCGTTATTCTAGGGGGCAGGTCCAAGGGTCTATGGGGATAGATTTGGAACACAGCTACATGTGGATAACCCTGGTGGATGAGGGATAACTATAGAGCCTTGGACTTTCTAAGTGATTGCCATCAACAGGAATAGAGGGCATGATGAAATCAATGGAAATGGACTCTAACATACATTGTTGGGTTTGAGTGGGCAGTTGGAGACTCTTACCAGGAAAACTCAGAACACAGACATCGTTGGGGAACCTGCAGAGGCTGGAACAGTGTGAGTGCTCTCTGGTAGCTTCTCTGATGTAATGTTGAGGACAGAGACTCAAAGGTGGCAGAACCGCGGAAATGCAGGTTTCTCTGGATAACTCGTGGCACTTTTTCTGATGGTGATGTTGAGGCTGGCTGAGGTACGGGGGCGTTTTCAGCATCCGCAGTTTAGTGAATATCCTTCCTACTGCTTTCTCATGGTGAATTCAAAGAAGATGAAGAAAACCATGTCACAAGTTGTGCCTGCTCACTTCTCTGGCCGGGGAAATGTGCTCCTAGATAACATGCTCTACCCCGAGCACGTTTGGAGCACACACACATCCCATGATCCAAGAAAGGGGGAAGATCTTTCCCTAAAAAATTAACAAAGGAAGAGTTAATGGATGCTGGGCAGATGGAATTAGAAATTGTGTATAGCTGGTATCAAGGACCCAAATGCTGGGCAGAAGGAATTAGAAATTGTGTATAGCTGGTATCAAGGACCCAAATGCTGGGCAGAAGGAATTAGAAATTGTGTATAGCTGGTATCAGGGACCCAAATAACAATGTGTTAAGCCAATTAAGGCTTCATTTTTCTTTTAACTAAAACAAGGACAGAAGTAGGTAATCCAAAGTTGGTGTAATAGCTCCACTGTCATCAGAGAGCCAGACTTCCTATGTTTTTTGCTATACCATCATGGTGCATGATATGTTCCCACAGTATCATATACTTATACTCTAGTATGCTGGGCTACCATTCCTCATGTCTGTATTGTGGAAGAAAAGGAGAAGGAAGCAGGGAAGGGAAAGAAGTACTCTCTCAATTGAGACAGCCCCCTTTAAAAAGCTTTCCAAGGGCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGCGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAACACAATTAAACCCCATCTCTAATAAAAAAATTCAAAAAAAAAAATAGCCGGGCGTGGTAGAGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGCTTGCAGTAAGCTGAGATCACGCCACTGCACTTCAGCCTGGGCAGCAGAGTGAGACTCCATCTCAAAAACAAAAAACAAAACAAAATAAAATAAAATAAAATAAAATAAAATAAAAAAATAAAAAGCTTTCCAGAAGTCCTGCTCAATCTCAGCTATATATTATGGGCTCTCATTAGTTGAGGTAGAGGTGGAGAGTTGTAATCTTTTAGCTGGGCATATTACTATGCTTAATAAAACTGGTGAGAATGGCTATTGGGTGGGCAACTATAAGCCTCTACCACAGCAGCAAAAATAAACTGATGTTAATGCATAAGTCAAGATTCGTATCATGAGCTATGATTGGCAGGAATATTTGTGGGAAGGAGAAGTGAAAAAGCTGGAAGAACAAGAACTGGGGTTGGACAGTAGAATACCACAACCGAAGATGGCAGAAGTTGGGTAGCTTTGCAGAGGCTAACACTATTAGAAGGCCTAGGATATGCCCATGAGGTCTAAGAACCAAGTCGATCATGAACCTGAAAACTCTGTCCTGGAAAATACCACTTCCTTTTGTTGTAATGTAGCCTGAAAAATCACAGGAAAGGCCCAGCTGAGAGCATCAGGTACCTCCCTTTTGTGATCACCTCTAATCTACAGTTACCATCTTCCATGTAGGGCCAGGCCTCTTAGACAGGTTAAGTTTCCCACCTATGGGCAGAGGGCTGCATGCGATGATATTATTTAGGCAATGCATTTGGTAAAACATGAACTTTCAATTGTCCCATAAGAACTCAAAAAATGGTGGTGTATTATGTGTCGTTTGCTATTTTAAGAAAAGAAAATTGTCTTGCTTGCAATGTGCAGGCATTGCTAAACTTGTAATTATTATTTTTATCCTTATTTAGCAAAATGTGATCTAATTGCTTTCATTTTACATAG
Seq C2 exon
TAAGAACATGTCCTCATCTCCGCCAGCCGAAACATGGCCACATCAGCTGTTCTACAAGGGAAATGTTATATAAGACAACATGTTTGGTTGCCTGTGATGAAGGGTACAGACTAGAAGGCAGTGATAAGCTTACTTGTCAAGGAAACAGCCAGTGGGATGGGCCAGAACCCCGGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165124:ENST00000374461:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains