GgaINT0063390 @ galGal3
Intron Retention
Gene
ENSGALG00000002613 | CCBE1
Description
NA
Coordinates
chrZ:8654317-8658707:-
Coord C1 exon
chrZ:8658570-8658707
Coord A exon
chrZ:8654329-8658569
Coord C2 exon
chrZ:8654317-8654328
Length
4241 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CATAGCAACTCACAGTCAAGGCA
3' ss Score
-5.98
Exon sequences
Seq C1 exon
ACATTGACGAGTGTGCCGCCAGCAATGGGACGCTGTGCTCGCACATCTGCATCAACACCGTGGGCAGCTACAGGTGTGAGTGCCACGAAGGCTACACCCGGGGGGAGGACGGCAGGACGTGCACCAAGGGAGATAAAG
Seq A exon
GTATGTGCCGTTGGGGTTAAAGGTCTGGGGTCAAAGGGTCTGCATCACACAAGGCTCCGTCTTGCTGTCAGGAAGCACTGCTATTTGTACGCATGATGGAGCGTTGGCACTGTTTGCCCAAAGATACTATGAACAGCCCAGAGCTCAAGAAACGTTAAGAATAAAATTTGCCAAATGCTGACATTCAGAAGCCTCCACTAATTTCGTGACTTCAGTGAGGTTATTTGGCATCTACATGCCTTCATCTGAGATCAGCACGTGGCTCTGGGTTGGGTGGCTGGGTTGGCAATTCCACGTACTTTTAAGCATTATTTAAATCAAAGGCCAGATTGTGTTGAATAACACCTGAATTCTGCTGACCTGCGATGAGTTTTCTCTGCCTCGTGACTGTGCTTAATTGGTTTTTTTTTCTATTGAAAGTAATTTGTGATGGAAAAGGGGTGAGAGTGAGGGCTTGTTCTTCCTTTTCACTGCTGTTTTCATAGCATAAATGTGTATTGAGTGTCAACGACTTTGAAGTTGTTGACCTCATCCCCATTATTAAATTACAGCATTTGGAGTACTGAAGATTAAATCCTGATATGGCAATTTAAAAAGCAGGGAGGAAGACAACAGTGTGCGCTCTGGAAATGAAAATAAAGGGGAAATGAAAAAGGAAACTTCACTCTTTTGATGAATGGCATCTTACCATAGGTTCATCTGTTAATGTCTGAGCACATATATCAGTGGGTGCTCCAAATCCCGCTGGATGGCCAAAGCCATTTGTAATTTTGATTTTCCCCTGAAAATCAAATGCAGTGGCTGGAGCCTCTCCATTAACATTAGTTGTTCCTTGTCATTTTCAAATGTTTGGGTTTTTTTTTCTTTATAAGTGTGTGTGTGGGTCGTCAAGGAAATACGTATAGCATAAATAATCCCCTTGCAAATAGCATTTTTAGCTAAATTTTCCTCTTGCTAATTCGTATTTCCTGACAGGGTAATGTCTGAAGCATTCGGGATAACTGACCATTGGAGACATTCGGTGCTGTGGAAATCATTCTGATATTTGAAAACAGCAGTTTTACATTGCCATAAAAACAACTGCACTCTGTTTTAAGATTTAATGCAAGAAACATGTAGGGTCCCACTCTCCAGGTTTACACTTTCTGTGTGTTTGCTGGAATTATCACTCATGCTCGTCCTGCCATGCATAGAGGCTGCAGCGTGAGCACCATTTTTGGCTCTGGCTATGACAAGTGAGCTTGACTAAATGCCCTGGATTTGTTAGCGGGACACAACAACAGGGAGTATTTTTCCTGCATCCACAGTAACGTTGTGTTTGACAGAGACAATACAGCCACCCGCTCTGAAGCAGGCACATTAAACCATCTCAGCAGGCTGAGCCCAGATAATGCAACACAGATGACCCACCAAGCAGCCTCTGTGCAAAGACCGCCCACAGCACAGCTCCCACAGAGCTCTGCTCTGCCAGCATCTCCTTCTCATCCAGCATCAGCTCTTTGAGCAGAGGCAAAGAGAACACGTTGCTCCCTGAGCTGCTCTCTTATTGATAGCACTGCAGGGTTCACCAGTACCTTGCTTAGATAGAAGGCTCTGTGTCATCCATGAGCTAGACTTCATCCTCAGAAACCCTCCATAAATGGGGCTACTTGAAGCCTTCTCTGCAGTAACTTTAGTTTCCCTGTGCAATGAAAACAGGTTATGTAAGTATCTTGCTCAATGCTGGCCAAACTGACCCTGGTGGGTGACCTCAGTGTCTGCACCGCGCGTGGGAGGCTGCGGCTGATTGCTGCCTGCCCCTCTGGCCCATCCTAGGTGGCTTCTGGCTTTGTCCATGCTTTAGTCTGGCTTTATTCGTATTTTGGTCCTGATACAGGATCAGATGGGGGTAGAGCGAATGTTTGATGGATGACTCCTTCTTTGGGCAAATCAGCAGTCATGTCTGGTATGAGTTAGGGGATTCCAGCTCTCTCCCGGGACACAGCTCACACTTGCTTATGCGACGCTGTTGGACTTCTTCCTCAGATAAATCAATCCAACTGGGTTTGCAGAAATCTCTCTGGTGTGATATTTTCCAAACATTAGCTGACCCCCGCACTGTTCACCTCCACGGGCTGTTACAGCCCTATTTATCTACAGTCATCAGCCCCATGTACCACATCTTTCTGGAAGGTGAACTGCATTTTATGATGAAACAAGAGGCCAAATTCGCTGCTTCTTAATCTGCACATAATTCTACTGACTCTAGTGGGATTGCCAAAGGTCTCAAACAGCAGAGGCTCTGGCAGTTTCTCTCTATGACCGCATGTTGTTGCTGTCAGCAACATTTCTTAACACGGTGTGTGTGTTGTATGAGGGAACTCATTTGGTAAGATACCTCTTAAAACAAATTTGGTTAAGACTAGTATTAAACACAGTTTTGAGGGGGAATTTTTAAAAAGGACATTTTAAAAATGTCTTTCTACATGGGCCTTTGTAAATCTTACAAAGGTCCGGTGATGAACCTGTCAAACACTCTAACTTTTTTAAAGAGCTGAAAAAATTTGAGAAGGGTGAACCCATGAGAGAACCGCAGTACTGACTTACAGTCAGGAGAAAATTTGCCTTATAGAAATATCAAGAGGTGTCCCGATAACAGCTTAACAGTTACTTGTTAACGGGGAAAAAAGAAGAAAAAAAAAACCTACATGCTGCAAGCTCTATTGGAGATGGGCAAAAAGGCTTTGGTGAGAGTCAAAATGATCAGTGATAGTCCTTCTGGGAGATGCTGTGGCCAAACAAATGGCCATGGAGACATAATAGCTGTAATTTGGTGAAACTATTTTATGTGGAGGTCAGTGGAAAAGCCCCTGGAGTACCTTCTGACCATAAACTTTGAGCCATCCAAGCACTGCACAGAAAGCTGTTCAGTCATGTGCTATCAAGGAGGGCTGGGAAGCTCCAAAAGCAGGATGCTTACTGTCAGACTCGTGCTAAATGAAAGAGGGAGGAGAGCTGTGTGTTACCACAGTGCCATAGGACTGCAGCATTGGTGCAGGCAGTGGTGACTGGGAAAACCCCCAGCCTTTGCTTCCTGATCTTCTGATTCAGGACTAACACTGAGGCCATGCTGCTGGTGGTCCCTCCGGCATCCTGCCCTTGCAGTCCCACTTGCTATCTGAGATAAGAGAAGGGCTTATGTGATAAAGTGCCACACCAATGGACTAAAACTACTGAAAACAAGTTTTTTTCCAAAGTTTGTGCATTGATGGTCTGTAGATGACCGTCTGATGGGTGCAGCGTCCCTTACTGGAGACTGTAAACATTTAAAGTCAAGTAGCATGTAACATACTTAGTATTGGAAAATTCTGTTTGTATTAAAAACGAAGCAGACTTTTTCATAATCAGTACACAGTTAGGAAAAGATGAAGGGCATTAAAGCTGACGTGAGGGATACAGTGCAATGACTAAGTACATTGTAGTAGATACTTTTTGAAGACTTTTGAAGGCTTTATCCAGGAGAACCTGCAGTTTTTTCATTACAAAGCACGCTCTGAGGGATCTGTGTTCCACAGTGTCTAATAACCCTTACTGGTCACACATCATATGCAGAGCCTCTGTGCAACTGATGCTTCTCAGCAACTGCGTGTGTAAGAAAAAATGCTTATCTGGAGTTTGCAAGTATGTGTTTTGGAAACCACGTTTCTCTCTCAGTGGACATCTGTCAAAACAGCACTTGTTTGTTTATGACGCAGAAGTGATTCACTGTGTATGGAACCAGGAAAAGGGCACATCCAAAAAAGCATTTGCAATATCTTTTACAATTCAAATCATTTCAAGGATTCTTGAAAAGATCCCATTCTTATGTCGCATCAACCAGTGTGACCTATTCTCTCGAGTGGATTTAAATCCCTATCATTTCTCTCAATCCCTATCTCCCATCAGGCTGATTCCATCACGTGGGGAAAAAGCAGTGATGATACAGAGCAGTATGTGTAAAGTGAATGAAATGACCACATTGTGAGGAGTTTTACTGTAATTTATAGCATATGAAAATTTGCCCTTCGGGGCACTGTAAATCCGGTCAGACCTGTAGGAACGCTCTGCCTTAAATGCAAAGATAAAAGAAGGGATGTAAACTTTTTCAGGTATTAAAAAAATAAATACTTCGGTGACTGTTAACTGAAAACAGCTGCCTTAAAAATGAGCTCAGAGCTGTCCCTGAAAAATTTTTCAGCCTTACATAGCAACTCACAGTCAAG
Seq C2 exon
GCATTAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002613:ENSGALT00000004114:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=6.4),PF146701=FXa_inhibition=WD(100=78.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]