MmuINT0029978 @ mm10
Intron Retention
Gene
ENSMUSG00000046318 | Ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:MGI Symbol;Acc:MGI:2445053]
Coordinates
chr18:66076308-66083247:-
Coord C1 exon
chr18:66083095-66083247
Coord A exon
chr18:66076412-66083094
Coord C2 exon
chr18:66076308-66076411
Length
6683 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
GAGCCTATCTCCTTTCCCAGGGC
3' ss Score
7.55
Exon sequences
Seq C1 exon
ATATCGATGAATGTGCCACCAGCAATACCACTCTCTGTGCACATATCTGCATCAACACCATGGGCAGCTACCACTGTGAGTGTCGGGAGGGCTACATCCTTGAGGACGATGGGAGGACCTGCACAAGGGGAGACAAATACCCCAATGACACTG
Seq A exon
GTAAGCAGGATAAGCATAATACCTCTAACTGTGTGCATGCTTCTATTAGATATTATATAGAATGTCAGTTTAGGAAATATATATATATACATATACATACATATACATATATGTGTGTGTAATTGTGTGTGTGTATATATATATATATACACACACATACATATATATGTATATATACATATGCAATATTATGTCTTATATATTTCTATAAATTTATATCTTATAAATGTATCTTATATGTATAATACATATTATATATTTATATGTATGATATTTCATATAATATCTTATGATATGTATATATTATAGATATATAATATGTATATAATATATACATATCATTATATAAAATAAAACTAGGTATAATCTATAATTCATATTATAATTATACTATATATAGTGTTATTTTTAATGTTGTAAATGTATTATTTATCCAATTTTATGCATTTACATGTAGTATGTATTATACATAACATGTAAATTATAAGTACTTGGGAGCCCAGCACTCCTTTGGGGACTCTGTGCAGGATGGGGCACTTACAAGTGGGACCTAGACTCATTCTATAGAGAGCTGATGGGAGCAGGGCCCATGTCAGCTGCTGCAAGCTGGCACATGCTGGAGGAAAGTGGCACATGCTGGAGGAAAGTGGCACATGCTGGAGGAAGGTGGCACATGCTGGAGGAAGGTGGCACATGCTGGAGGAAGGTGGCGTGCCTCTGGAGAAATCAGTAGCACTTGGCTGTGTGTTTCCAAGAATCTAGAATGAACAGGAAAGGAGCCAGATGTACCATGTTCTCTCAAAGAAAATGTGCTGAAATATGTATTTGTATAATTTCTACATATGGCCACAGTCTATTTTAGCACAAGTCAAAATGCAGTCTCTATCATGTGCCCATCTGTGAACTAGTTGTTTGGTTCATGATCAGATAAAAAACAGAAAATGAGAGAGCATGTAAATTTTTACACCAAGTTGAGAGAGGACATTTGTTTAAATTCCAAACTTTATTCTTGCATTTCACATATGATCTGTCAAATAACTCATTTTGTATCAGCCCACAGTTAGCTACAAAATTTCTACCAGCTGGGGCTTCTGCATGGCGCTCTGAGACTGCTGGACATCAATACAGCAGCCAGATTCAGCCAAGATGGCTGTTCACTGGAGCCTAGGGTCAGCCTATATACGGGTTACTTCTCTGAGTCCAAAGGAAGGGGTGGGGGGAGAATAATGCAAAAGCAGAAGAAAGAGGAAGGGGAGAAAGAAAATAATTCCCAGCTTGGTGGGCAAGTGCTTATAACATTCACTTGCAAAGTAACTCTAATACCTCTGCCAAGTGCCAAGCTAGTCATTAAGTTTTAGAATTTTAGCCTTTGGAGACGAATGCCAATAAACCCTCCAGCTGGATTGACCTTTGGGTCAAAATCATCTTTGCTACCAGTGTTGGTGCAGAGAAGTCCTTAGCCATTTAGAGGGTCAGAAGTTGAGGTCTGTGCCATTATGAACATGCATGCTTGCATACATGCGTGCACGTGCATACACACAGATATATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGGGAGAAGGAGGAGAAGGAGAGGGAGGAGAGGGAGAAGGGGGAGGGGGAGGGGGAGAGGGAGAGTGTGTGAGTTAGAGGTTAGAGGACCTGAGGCATCCCTGGGAAGGGAGGAGGCTCCTGGGGCAAATCACATGCACAGAGATGTGCAGGGAGATGAGAAAACCAGAAACATCTGGACAATCACAAGATGGAGCCTCAGCTTCAAAAAGGGCCAGGAGGCAGCAGACAGCTGGAGACCAGCTGCCTCACAAGGAACAACTACAAAGGCAGATTCTGAAGGGCATCTCAGTTGAGTCATGGAGAAGCCACCATGTGCAAAACGTAAATGCAAAATAACTCTTCAGAGCCAGTTCAGAACAGGGCATTTAGGGATCCTGCGCATGAGCTAGAGGGACTACACAAGGGGACACCTTCACAACTCCAAATCATGTGGAGCCCACAAATTAAGTGGACACCACAGATCAAGGGACAGCAATCTTTGAGGAACAACATTTAATTGAGAAAATAACTTAGAGACCACTTTTTATTCAAAATTAAAAATCACTGCAGTTTTGCCCCATGTGCAAAGAGGATGGGAGAGAGCCAGGGAGGCATGGCCTATCTCCGGGAGGTGTGGCCTATCTCGGGGAGGTATGGTGTACCTCAAGGAGGTGTGGCCTATCTCAGTGAGGTGTGGCCTATTTCAGGGAGATGTAACATATCTGGAGGAGGTGAGGTGTATCTCTTAGGTTGTGTCCTTTATTGAAATGAAGGTGTTCATTGACAGTGGGGGCCTCCCTCTAGTCACCAATTCATGAATATGTAGGACTGGGGGAAATAGTCCTACAATCATTTTTATTTTGTAGAGTTGGCTTTCCAGCTGCCTGTACACAGTTTGCTGTGGGTAGCCTGAGTGGCTATAGTGAGGAGCCCAAAGCAGAGCAAAACCATCCGGACAACAAACACGTGTTTCTGAGTGGCAGGCCAGAAATCCGTGCTGGTTAGGGTTCAGATACCCATAGCACAGAGCTGGCGCTTCCCACAAGAAGTGCCTGGGCAGAATGGTCTCCAAGGACAGAGACATCAAGAGCAAGAAGAAGAAAGACCAGATGGAAGTTCCAGAGGCCTCTATAGGATTTGATGTTCTAAGTTCGTTAGTTCTCTGGCCTCCAGAAATTTCCCTCCCTTGCAGGAACTCCTAGCTTCTCCATGCACATTTCTCCTTGTTCCTCAGGGCATGAACCACTGTGGTCCATCAGTTCACTAACAGGATCTGCTTTCGTGAGAAGCACTAACCTATGCCCCATCTTTAGAAGATGGCTTAGCAAAGGTGAGAGGAGGAGAGGCTGAGAGGTCGCGTAGCTTCTATCGTTGTTGTTTTGCTTTTCTTCTTTTAGTTTTTTTGAGAATTTCATACAGTTTCATATATTCTGCACCTTGGCCAGTTGTGGTTTTTGATCATCATCTACTGCAAACAGAAGGTTCTCTGGTAAGAGCTGAGAGATGCCCTAGTCTATAGGCCTCATGATAAGTCACTAGGAGATGGTTCAACCCTGTGTAATTGAATAATGGTAGGAAATTCTCTCCTAGCTATACCATAAGTGCTTGGCTTGATAATGTCTTCTTGTGGAGCAGGCCTCAAGTCCCATCAGAAAATGATTGTCTCACTCTCTGGCCCACTCAGAGGCTCACACTCAGTAAGCTTTGATGTTTAGCCCAGGACAACTTGTCTAGGGATAGTGCCTCCCACAGCGAGCTAGGCCCTCCTGCATCAGCTAATAATCTGTACTATCCCCGACAGACAAACCAACAAGCCAATGGGATCTGGGCAATTCTGCCATTGAGGCTTTTGTCTCAGATGCGTGGGTGACCAGGGTTGGATCAGAGCTCCCTGACTGTGTGACCGCGCTCTGGACCTGTTTTCCTCGGTGTCTGCGGACACTATTAATCTCCAGCTCCTGGACCCCTTTACACTTGGAAAACTTTTCCAAATTTGCTGGGGTCCCCATAACAATGCAAGTCCTGCCTGCCATTTTTATTTCCTTGTCCTCTTTCTGTGCAAGTTCTCAGACTTGAAAGTATGCCCAACTCTAACACCTTCTGTGGAGGGGCCATTTCTTACTGTATCTCAAGGGTGAGTGATTTCACATTTGAACGAGCAACTCAAAAATAAGGCGTGCTCACAGCAAACAGAGCCCTCCAGACATGAGGCAGCTAAGCATTTCCATCTGCTTTGAGCAAATTAGTCAGCCCAGTATTTCATCGCTCTTTTTTTTAAAATGAAGATAATGATTATTGAGTATAAACATATGACCAAAAATCACTTCTCCCTGACTGGTATATGTTTTGAGTTTGAGGGACGATCTTTAGGGAAAGATATTTCCTAAGCTTTTCATTGTTCAATGTCTACAACGTTAGAGTCGGACAAATTGCAAATGGAAGTCCAGGGCCAGTGAGCTGCCGGTCATAGCTGCTTGATACCATGAGATTGATTCCACAGCCCATGTAAAGGTGGAAGGGGACAAACAACCACACAAAGTTGTCCTCTGACCTCCACACACAAACCTTGGCACATGAGTACATTCACATGCATGCACATGCAAAGGCAGTATAGTAAATTTTAAAACTGAAATAATAATAGTCATTAATAATAATAATAACAATAATGACAATGATAATGATAATGTGGAAGGCTAGCATAGAAGGGGCATGGCCCCAGGACAACCTCCACCAATTTGAAAGATTTTATCCTGGATGCGTGATACAAGCCATCTGACATGTCATAGCAGTGTTTGGCCACTTTGATTTTTATCTTTGAAAACCCAGAGCTGGAGCCAGTAGAGACACAAGGGAGTCTGTGTAGCACCATGGGGAGACAACGAAGCAAATGTTGGCTCCGTCATGATTAGCTTACTAGTCTTTATTTTCCAACTGGTGTTTATTTTCTGATAAAGTTACCGTGACCCCCAAGTGTCAATCACTCCAGTTCAAAGACTCAGAACACCACCAGGTGTTTCAAATAACTTTCAAGCTCTGATAATGCACAGATTAGCAAGTTCTTAACATGGGCAATGTTAAAACATGCTGACACTGTCCCTTACTGCCACCCCCAGGTGGATGGGTGCAAAGAGATTCCAAAGAAGCTTTCAAAGATCCCTCAATGGTTGTGATGTATCAGGACTGAGTTCACAAAACAGCACAGTCAAGTTATTAAACTAAAAGGCTTTGTTCACTTGTGGCACTTCCCACATGAAGCACATTCTTGGGTTTTTTCCCCTCAGTTTATTTGATAATGTTACCATAGTATCTAAGCCCTTACATTTCTAACGCTCTGAATGTTTAACCCGACTCTCATAAGAATTAGAGCTCCCTGCCCCCGTGTGGCTACTAAGTAGTACTACATCTTTAAAATCTGGGGAGTCAGCAAAATTGAGGTCAAGGCATGTTTAAGATATACAGTAAGTTTAATAGAGTGGCTTCCTTGGATCTGCTTGACCACATCTGGATATTCTTAGCAGAAACTCCAATAACATCCTCCCTTTGTGCCTACCCTGCATCCCAAAGGGCCAGTTTGGTGGCCCTTTTAATTGTGTGGTCTGCACACAGCACTTACCTGTAAAAGAACGCTAAGGTTGTATCAGTTCTAACTTTTCGTTTAACTTTTAACATCAGTCCAGAGCCAAGTGACAAAGTAGGTTTATCCTGTAATGCTAATAAACAGTGGTTCCGCCACACTAACACTTGGAAAATTCAGTGGAGACTGTGAAAGCTAGGGATATGGATTTGGGCTTTTCACTCCTGTACGAGAACCCTCAACTGGTGGCTTGGCCTTACACCAAAGTCAGATGTAAGTCATGACGTAGAAATGTTCATTGAGCTCCCGTTCACAATACCTATGTCATACAGTGTGTGACTACAGAAGAGAGATGGGTGGAAGGGTGGAGTAGTGGTTAGAGTAAATGGTCAACTGTCAACTTGACACTGTGAGTTATCTGGGTAGAATCTCAGTGAGGAATTATCTCAACTGATTTGGTCTATAGGCATACGGGGGTATATCGGGGGGTGCGTCGATTATGTTAACTGTTAACTGAAGACCCAACCCGCAAGTGGGCAACATCCTTCTCCAGGTTCAGGGCCTGGAGTGTATGAAAGAGGAACAAGTGAGCTGAGTATAAAATCATGCACTCATGTCTCTCTGCTCTCAACTGGGTATGACTAGTCGCTTCCATTTCCTGCCACTTTGATTACAGTGACAGGCTATGACCTGGCATTGGGAGCAAAAAATAAGCCCTTTGTCCCCTATGTTGCTGATTGGTGGTGGAAGAGTGACTCAGAAAGATGGATGTCTCCATGCAGATGATTGTGTTGTGTCTGTCATAGTGAAGAGGTGAATCCTAAGCCAGCTTCAGATACACTCAGAGTAGAGAATGGCAAACACCCACGGGAACAGATAGCTCGGCCTGGGGTCAAGTGGATTTGTAGATGCTAGGACAGAGGAATGGTACCCATCTCTCACAATTGAGTGATACACCCAAGGGGATGACAACTCATGTCATCATTTTCAAGCTGTCTTCTCTCCTGCAAAGCCCTGTTTTCAGACTCAACGGGGCCATGGTCTACCCGCTGAATACTACACTGTCAGGGAGGGAGAGGGGGAAAGCAGTATTGTGCAAGCTGCTGCCTGGGTGTTGCACGTGAACTCTGATCCCTGGAGAACAGTAAAATTGTGTCAGAGTTATAGAGCCACCATTCTAGAAAGCAAAGACAAATGCACACATTTCCACCCATGGGGGATGCCAATAAAAAGGACCATGACATGTGTTTTCACACATTCGGGATGTCAAAGAACAACTGGCTCCAAAGAGTAGAAGGGCCTCTCTCTCTGACCCTTCCCCTCTCCCCTGACCCTGGGTCATCTGACAGAGTCACTATGAAAACCTGAGAACCATAAAACTGTCAACACCTATCCCCTGTACCTTGCACGCTCAGCCTTTCTGTACCCCATGCCCAGGCACGGCCCCACCAGTGCCATCTCTCCAGGCATCTGGCCCAACAACCTCCCAGCTGAAGCTGAGCCTATCTCCTTTCCCAG
Seq C2 exon
GGCATGAAGAGAAGTCCGAGAATGAGGTGAAAGCCGGGACCTGCTGCGCCACATGCAAAGAGTTCTCCCAGATGAAGCAGACCGTGCTGCAGCTGAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046318:ENSMUST00000130300:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.248
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=5.8),PF146701=FXa_inhibition=WD(100=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types