GgaINT0063390 @ galGal4
Intron Retention
Gene
ENSGALG00000027785 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chrZ:9171904-9176533:-
Coord C1 exon
chrZ:9176396-9176533
Coord A exon
chrZ:9172011-9176395
Coord C2 exon
chrZ:9171904-9172010
Length
4385 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGGAAACTGCTTTCTTTCAGCTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
ACATTGACGAGTGTGCCGCCAGCAATGGGACGCTGTGCTCGCACATCTGCATCAACACCGTGGGCAGCTACAGGTGTGAGTGCCACGAAGGCTACACCCGGGGGGAGGACGGCAGGACGTGCACCAAGGGAGATAAAG
Seq A exon
GTATGTGCCGTTGGGGTTAAAGGTCTGGGGTCAAAGGGTCTGCATCACACAAGGCTCCGTCTTGCTGTCAGGAAGCACTGCTATTTGTACGCATGATGGAGCGTTGGCACTGTTTGCCCAAAGATACTATGAACAGCCCAGAGCTCAAGAAACGTTAAGAATAAAATTTGCCAAATGCTGACATTCAGAAGCCTCCACTAATTTCGTGACTTCAGTGAGGTTATTTGGCATCTACATGCCTTCATCTGAGATCAGCACGTGGCTCTGGGTTGGGTGGCTGGGTTGGCAATTCCACGTACTTTTAAGCATTATTTAAATCAAAGGCCAGATTGTGTTGAATAACACCTGAATTCTGCTGACCTGCGATGAGTTTTCTCTGCCTCGTGACTGTGCTTAATTGGTTTTTTTTTCTATTGAAAGTAATTTGTGATGGAAAAGGGGTGAGAGTGAGGGCTTGTTCTTCCTTTTCACTGCTGTTTTCATAGCATAAATGTGTATTGAGTGTCAACGACTTTGAAGTTGTTGACCTCATCCCCATTATTAAATTACAGCATTTGGAGTACTGAAGATTAAATCCTGATATGGCAATTTAAAAAGCAGGGAGGAAGACAACAGTGTGCGCTCTGGAAATGAAAATAAAGGGGAAATGAAAAAGGAAACTTCACTCTTTTGATGAATGGCATCTTACCATAGGTTCATCTGTTAATGTCTGAGCACATATATCAGTGGGTGCTCCAAATCCCGCTGGATGGCCAAAGCCATTTGTAATTTTGATTTTCCCCTGAAAATCAAATGCAGTGGCTGGAGCCTCTCCATTAACATTAGTTGTTCCTTGTCATTTTCAAATGTTTGGGTTTTTTTTTCTTTATAAGTGTGTGTGTGGGTCGTCAAGGAAATACGTATAGCATAAATAATCCCCTTGCAAATAGCATTTTTAGCTAAATTTTCCTCTTGCTAATTCGTATTTCCTGACAGGGTAATGTCTGAAGCATTCGGGATAACTGACCATTGGAGACATTCGGTGCTGTGGAAATCATTCTGATATTTGAAAACAGCAGTTTTACATTGCCATAAAAACAACTGCACTCTGTTTTAAGATTTAATGCAAGAAACATGTAGGGTCCCACTCTCCAGGTTTACACTTTCTGTGTGTTTGCTGGAATTATCACTCATGCTCGTCCTGCCATGCATAGAGGCTGCAGCGTGAGCACCATTTTTGGCTCTGGCTATGACAAGTGAGCTTGACTAAATGCCCTGGATTTGTTAGCGGGACACAACAACAGGGAGTATTTTTCCTGCATCCACAGTAACGTTGTGTTTGACAGAGACAATACAGCCACCCGCTCTGAAGCAGGCACATTAAACCATCTCAGCAGGCTGAGCCCAGATAATGCAACACAGATGACCCACCAAGCAGCCTCTGTGCAAAGACCGCCCACAGCACAGCTCCCACAGAGCTCTGCTCTGCCAGCATCTCCTTCTCATCCAGCATCAGCTCTTTGAGCAGAGGCAAAGAGAACACGTTGCTCCCTGAGCTGCTCTCTTATTGATAGCACTGCAGGGTTCACCAGTACCTTGCTTAGATAGAAGGCTCTGTGTCATCCATGAGCTAGACTTCATCCTCAGAAACCCTCCATAAATGGGGCTACTTGAAGCCTTCTCTGCAGTAACTTTAGTTTCCCTGTGCAATGAAAACAGGTTATGTAAGTATCTTGCTCAATGCTGGCCAAACTGACCCTGGTGGGTGACCTCAGTGTCTGCACCGCGCGTGGGAGGCTGCGGCTGATTGCTGCCTGCCCCTCTGGCCCATCCTAGGTGGCTTCTGGCTTTGTCCATGCTTTAGTCTGGCTTTATTCGTATTTTGGTCCTGATACAGGATCAGATGGGGGTAGAGCGAATGTTTGATGGATGACTCCTTCTTTGGGCAAATCAGCAGTCATGTCTGGTATGAGTTAGGGGATTCCAGCTCTCTCCCGGGACACAGCTCACACTTGCTTATGCGACGCTGTTGGACTTCTTCCTCAGATAAATCAATCCAACTGGGTTTGCAGAAATCTCTCTGGTGTGATATTTTCCAAACATTAGCTGACCCCCGCACTGTTCACCTCCACGGGCTGTTACAGCCCTATTTATCTACAGTCATCAGCCCCATGTACCACATCTTTCTGGAAGGTGAACTGCATTTTATGATGAAACAAGAGGCCAAATTCGCTGCTTCTTAATCTGCACATAATTCTACTGACTCTAGTGGGATTGCCAAAGGTCTCAAACAGCAGAGGCTCTGGCAGTTTCTCTCTATGACCGCATGTTGTTGCTGTCAGCAACATTTCTTAACACGGTGTGTGTGTTGTATGAGGGAACTCATTTGGTAAGATACCTCTTAAAACAAATTTGGTTAAGACTAGTATTAAACACAGTTTTGAGGGGGAATTTTTAAAAAGGACATTTTAAAAATGTCTTTCTACATGGGCCTTTGTAAATCTTACAAAGGTCCGGTGATGAACCTGTCAAACACTCTAACTTTTTTAAAGAGCTGAAAAAATTTGAGAAGGGTGAACCCATGAGAGAACCGCAGTACTGACTTACAGTCAGGAGAAAATTTGCCTTATAGAAATATCAAGAGGTGTCCCGATAACAGCTTAACAGTTACTTGTTAACGGGGAAAAAAGAAGAAAAAAAAAACCTACATGCTGCAAGCTCTATTGGAGATGGGCAAAAAGGCTTTGGTGAGAGTCAAAATGATCAGTGATAGTCCTTCTGGGAGATGCTGTGGCCAAACAAATGGCCATGGAGACATAATAGCTGTAATTTGGTGAAACTATTTTATGTGGAGGTCAGTGGAAAAGCCCCTGGAGTACCTTCTGACCATAAACTTTGAGCCATCCAAGCACTGCACAGAAAGCTGTTCAGTCATGTGCTATCAAGGAGGGCTGGGAAGCTCCAAAAGCAGGATGCTTACTGTCAGACTCGTGCTAAATGAAAGAGGGAGGAGAGCTGTGTGTTACCACAGTGCCATAGGACTGCAGCATTGGTGCAGGCAGTGGTGACTGGGAAAACCCCCAGCCTTTGCTTCCTGATCTTCTGATTCAGGACTAACACTGAGGCCATGCTGCTGGTGGTCCCTCCGGCATCCTGCCCTTGCAGTCCCACTTGCTATCTGAGATAAGAGAAGGGCTTATGTGATAAAGTGCCACACCAATGGACTAAAACTACTGAAAACAAGTTTTTTTCCAAAGTTTGTGCATTGATGGTCTGTAGATGACCGTCTGATGGGTGCAGCGTCCCTTACTGGAGACTGTAAACATTTAAAGTCAAGTAGCATGTAACATACTTAGTATTGGAAAATTCTGTTTGTATTAAAAACGAAGCAGACTTTTTCATAATCAGTACACAGTTAGGAAAAGATGAAGGGCATTAAAGCTGACGTGAGGGATACAGTGCAATGACTAAGTACATTGTAGTAGATACTTTTTGAAGACTTTTGAAGGCTTTATCCAGGAGAACCTGCAGTTTTTTCATTACAAAGCACGCTCTGAGGGATCTGTGTTCCACAGTGTCTAATAACCCTTACTGGTCACACATCATATGCAGAGCCTCTGTGCAACTGATGCTTCTCAGCAACTGCGTGTGTAAGAAAAAATGCTTATCTGGAGTTTGCAAGTATGTGTTTTGGAAACCACGTTTCTCTCTCAGTGGACATCTGTCAAAACAGCACTTGTTTGTTTATGACGCAGAAGTGATTCACTGTGTATGGAACCAGGAAAAGGGCACATCCAAAAAAGCATTTGCAATATCTTTTACAATTCAAATCATTTCAAGGATTCTTGAAAAGATCCCATTCTTATGTCGCATCAACCAGTGTGACCTATTCTCTCGAGTGGATTTAAATCCCTATCATTTCTCTCAATCCCTATCTCCCATCAGGCTGATTCCATCACGTGGGGAAAAAGCAGTGATGATACAGAGCAGTATGTGTAAAGTGAATGAAATGACCACATTGTGAGGAGTTTTACTGTAATTTATAGCATATGAAAATTTGCCCTTCGGGGCACTGTAAATCCGGTCAGACCTGTAGGAACGCTCTGCCTTAAATGCAAAGATAAAAGAAGGGATGTAAACTTTTTCAGGTATTAAAAAAATAAATACTTCGGTGACTGTTAACTGAAAACAGCTGCCTTAAAAATGAGCTCAGAGCTGTCCCTGAAAAATTTTTCAGCCTTACATAGCAACTCACAGTCAAGGCATTAATAATGGTGAGAATGCCTCTTCTTTTCACAGTCTGGGGGAATGCAACGACCTCTCAGACTCCAGTTGCTTTTGCAATTACTTTATGAACTTCTTTTCCTTGGATCTTTATATTTGTATTGGAAACTGCTTTCTTTCAG
Seq C2 exon
CTGGACTTTCTGAGAAATCTGAAAACGTGGCGAAACCAGGGACATGCTGTGCCTCTTGTAAGGAATTTCATCAAATAAAGCAGACAGTTTTGCAACTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027785:ENSGALT00000043658:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=6.4),PF146701=FXa_inhibition=WD(100=78.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]