GgaINT0064439 @ galGal4
Intron Retention
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54571022-54573571:-
Coord C1 exon
chrZ:54573458-54573571
Coord A exon
chrZ:54571194-54573457
Coord C2 exon
chrZ:54571022-54571193
Length
2264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTGCTCTGTTTTCCTTTCAGTCT
3' ss Score
10.79
Exon sequences
Seq C1 exon
GCCAGTATGGGATTCCCAGACCCTGGTACTTTCCTTTCACAAAATCCTATTGGTTTGGTGAAGAATCTCAGGACAGGCAGCATCTTCATCCTGACCAGAAGGGGCCCTCAGAAG
Seq A exon
GTAAGCACTGAACTTGAAGAAAGCTCCAGTGAAGTGTTGAGGTCTTCTGCTTTGGAAGGAGAATTCAAGGGCAGAAGTACTAGCCTGGCTAATATGAAAATTGATTATCCATTTGTTCTCAGTTTGGGATCAGGTGTTTAGAGAAACCCAAGACAAACAGGTACTGCAGCCTCAGAGCTGTGAATTCCTCTAGTTTCTGCTGACTGTAGTGACACTGGAGATTCCTGTGCTCCTGGTGCAGTCAGTAGAGTGAAAAGAACTAAAAGGCAATTATGTGGAAGATTTCTGTCACTGAGTAAGAAATACGGTCAGTTACTCACATATCTCATTCCTTCGTGGATCTCCACATGCTTAAGGGAATATGATGTTTCTTAGGACTCCCACACAGTTAAATGATGTTTTTAAAACCCATCATATCATAGAATCATAAAATCGTAGAGTGGCCTGGGTTGAAAAGGACTACAATGATCATTGAGTTTCAACCCCCCTGCTATGTGCAGGGTCGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCTACAACCTCCTTGGGCAACCTGTTCCAGAGCATCACCACCCTCTGCGTGAAAAAATTCCTCCTAATATCTAACTTAATCCTCCCTTGTCTCAGTTTAAGACCATTCCCCCTTGCCCTACCACTGTCTACCATCATAAAGAGCCGTTCTCCCTCTTGGTTGTATACACTCCCTTCAAGTACTGGAAGGCTGCAATGAGGTCTCCCCAGAGCCTTCTCTTTTCCAAGCTAAATAATCCCAGTTCCTTCAACCTTTCCTCATAGGAGAGGTGCTCCAGCCCTCTGATCATCTTTGTGGCCCTCCTCTGGACCCACTCCACGCGCTCCACGTCCTTCCTGTACTGGGGGCCCCAGGCCTGGACGCAGTACTCCAGATGGGGCCTCACAAGAGCTGAGTCGAGGGGGACAATCACCTCCCTCTCCCTGCTGGCCACCCCTTTGTTAATGCAGCCCAGAACACAGTTGGCCTTCCGGGCTGCAGGCGCACACTGCTGGCTCATGTCCAGCTTCTCATCCACTAGGACCCCCAGGTCCTTCTCCTCAGGGCTGCTCTCAAGAAGATCTTCCCTCAGTTTGTATAAATACCTGGGATTGCACTGACCCAAGTGCAGCACCCTGCGCTTGCCTTGTTGAATCTCATTAGGTTCTCATGGGCCCACTTCTCCAGCCTCTCCAGGTCCCTCTGGATGGCTTCCCTTCCTTCCAACGTATTGACTGCACCACTCAGCTTGGTGTCATCCGCATACCTGCTGGGGGTGCGCTCGATTCCATCGTCTGTGTCACTGATGAAGATGTTGAAGAGCACTGGTCCCAAGACAGACCCCTGAGGGACACCGCAGGCCTCCACCCTGACTCAGAACCATTAATCACTACCCTTTGGCTGCAAACAGCCAGCTAATTCCTAATCCACTGAACAGTCCATCCTTCACATCCATACCTCTCCAATTTAGAGAGAAGGATGTGGTGAGGAACCATGTCAAAGGCCTTGCAGAAGTCCAGGAAGATAATATCCACTGCCCTTCTCCCATCCACCAAAGCTGTCACTCCATCATAGAAGGCCACCAGATTGGTCAGGCACGATCTGCCCTTGGTGAAGCCATGCTGGCTGTCTCAAATCACCTCTTTGTCTCATATGTGCCTTAACAAAGGATCTGCTCCATGATCTTCCCAGGCAAAGAGGTGAGGCTCACTGGCCTGTAGTTCTCCAGGTCTTCCTTTCTCCCTTTCTTAAAAGTGGGAGTAATGTTTCCTTTTTTCCAGTCACCAGGGACTTCACCAGCCAGCCATGATTTTTCAAATATGATGGAGAGTGGCTTGGCAACCACATCAGCCATCTCTCTCAGAACCCTAGGATGGATATCATCCAGCCCCATGGACTTATATACGTTCAGTTTCATGAGGAGGACTTGGACTTGTTCCACCCTTACAGTGGGACAGAAACCACTCCCCACACGCTCACCTAGAGGCTCATGGTCCTGGCAGAGATGGGAAGCCTGACCAGCCGTGAAGACTGAGGCAAAGCACTCATTGAGTACCTCAGCTTTTTCTATGCCTGAGGAAGCCAGCTGCCCATTACCTTTCATCACAGGGGGAACACTCTCCTTTGCCTGTCTCCTCCTGCCTGTATGTACCTGTAGAACCCCTTCTTGTTGTTTTTCACATCCCTTCTATTTTGCTCTGTTTTCCTTTCAG
Seq C2 exon
TCTGCAAGGAGGAAGAGCCTATGCATCTGAGTCTTGGTGTCTCCATCCAGAACCTGGTGAAGGTTTATCGTGATGGCAAGAAAGTTGCTGTGGATGGTCTCACACTGAATTTCTATGAAGGGCAGATCACATCATTTCTGGGGCATAACGGAGCAGGGAAAACCACTACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433:ENSGALT00000024891:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(18.6=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]