GgaINT0066429 @ galGal3
Intron Retention
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52384094-52384361:-
Coord C1 exon
chrZ:52384295-52384361
Coord A exon
chrZ:52384142-52384294
Coord C2 exon
chrZ:52384094-52384141
Length
153 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTTTTTTCAATCCCCTAGATT
3' ss Score
10.26
Exon sequences
Seq C1 exon
AAATCCTACGCCGGATCACTGGGCACTAGTTACCGGACTGCCAACATACGTGGCTGAGAGTGGGTTT
Seq A exon
GTAAGTACATAGCTTGGACTTCATTAAGGCTTTCTGAAATGAAGTCTCATTAAAGCTGCTGTTCAGGTTTTTTTGTTTGTTTGTTTGTTTTGGTATTTTAATTAATTTGTGTCCAATTTGTAAAACTTTTTTTTTTTTTTTTCAATCCCCTAG
Seq C2 exon
ATTTGCAATATTATGAATGCTGCTGCAGACGAGATGTTTAACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
NA
C2:
PF0159021=GAF=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTACGCCGGATCACTG
R:
TGAAAGTTAAACATCTCGTCTGCA
Band lengths:
114-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]