GgaINT0072508 @ galGal3
Intron Retention
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75894494-75895604:-
Coord C1 exon
chr4:75895476-75895604
Coord A exon
chr4:75894638-75895475
Coord C2 exon
chr4:75894494-75894637
Length
838 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTGAGAGTATGTTTTGGTAGGTA
3' ss Score
1.69
Exon sequences
Seq C1 exon
AACTGGATAGAAAAGGAAAAATCATTCGTGTACTCTATGGGATTGGAAAGTTCATTATGTTGCTTGGATTACTCTACTTGTTCGTGTGTTCTCTGGATGTACTGAGCTCTGCTTTTCAACTAGTAGGAG
Seq A exon
GTATGAAAATGCATTTAAAGTATCAAGAATAAGCTATGAATGGGGCAGTAAATCTCATCTGAATCACTAAATTGCAAGTATCACTCTTAAAGAGCGTATGCCAGATTTATTTGTAGAGATGTAGGTTTAGAAGGAAGTATCTCTGCGTGAAGGCTGACCTTCCTCTGTGTGAAAGGACGTTTGTTTCTAAGTTTCCAAAGAGCTGTTGATGTAGAGACTGCTCTCAATTTCTTAGGAAGCTCTGTTACTTTAGTGACAGAAGCATTCAGCACTGAAATGTCCCCTAAATCATTCAAAGATGAAAACTGTTGAAATGTAATTTTACATTTACCTTTCTCTAAGGGTTGAATTTGGCTCATGGATGTGGTTTTCAAATAAATATGTGAGCTTCTGTAGAATTTTTGCTGGATTTTTGGCAACCTGGAAAGCTACGGGAACAGTATTACTCGGAATTATTAAAACAACTTTCCTTGACGTGGTAACCAAAAGTCATCAAAGCAGTAATAGCATTTAAATCTATGCATGTGTGCTTTTTTACTCTACAGTTATGCTTTCTTACTCTACAGTCTTCACTCTTTTGCTAGTTTTATATGGTTCTCTGCAGAATTCACTGGAACTTGTGTAGTCACTGAAATGAGACAACATAAGGTATATAACTGATAAACTGAGACTTCAGAACCTGAATTTGGATCCCTGGGCTACATCACCTTGTACATTTTTCTGCTTGCAAGCATGGATGCATATTTATCATGTTAAATGGTTGAATGGTCTTTAAATGCTCTGCTAATTCGTATTGACTTGACCTTGTACTCCTCTAACTGAGAGTATGTTTTGGTAG
Seq C2 exon
GTAAAGCAGCAGGGGACATTTTTAAAGATGATTCAGTGCTCTCTAATCCTGTTGCGGGGCTGGTGATAGGAGTTCTGGTGACTGTGATGGTCCAGAGCTCCAGCACTTCTTCATCCATCATCGTCAGCATGGTGTCCTCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(12.1=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGAAAAGGAAAAATCATTCG
R:
TGTAGAGGACACCATGCTGAC
Band lengths:
270-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]