MmuINT0146275 @ mm9
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53450378-53452142:+
Coord C1 exon
chr5:53450378-53450506
Coord A exon
chr5:53450507-53451998
Coord C2 exon
chr5:53451999-53452142
Length
1492 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AACCATCGTTTGTCTTCTAGGCA
3' ss Score
9.26
Exon sequences
Seq C1 exon
AGAGAGACACCAAAGGGAAGACGCTCTGCATTTTCCAGGGGGTTGGGAAGTTCATTCTTCTCCTGGGGTTTCTCTACTTGTTCGTGTGCTCCCTGGATGTACTGAGCAGCGCCTTCCAGCTTGTTGGAG
Seq A exon
GTAAGGACCCTAAGGCTGGAGGTGGGTTATGCTTGACTCCTGGTTTCTCAATTCAGGTGGGCAGATCACGGGTTTTCTCTTACTTCACCATGGCTGAGGTGGGTGAGGGGCAAGCCTGACTATCTCAGACATCCCCCATCACAGAGCAGAGAACTGAAGCATCTAAGTGGCTCTTGCTTAAGCCAGGAACCTGGGCTGGAGCTGATGTCAGCTGCCAGAACCCTTTCCATTGTACCCAACCCCCCCAGCAGGAAGCTGTTTCAACTCCCTTTATCTGCAGGATGCCTGCTGCCTCCAGGCTTCTGTCTAGAGTTTGAGAATAGAATGATCCCTTAGGCCAAAGCAAGCAGGAAAGATCAAAGCCAACCCTTGCTGGGAAGAGCCCACAGTAGATACCTTCCCTGGCCTGAGCGCAGGACGCAGTGATCAGTGTTTCAAAAAATCCAGAATGAAATTCCCACCTGTGCTCAGTTAACTTTGGACCCTCTCTGGGTGACAACAGATAGATAGCACCCTGAGTGGCTCCGTCTGGAATAGTCCTCTCTAAGCCCCTCCCACACGGAAGAGATGATCAAGGCTTAGAGGTCACTAACTAACCAGACTTTAAACACAGCCTATAATGAACACAGTGGGATTCCAGAGCACTGATCAGGGTAACACAAGAGACTGTGGATTTTTCTGCCTTTGGTGCCCTGGGCTAGATATAAACAAATAGAAAGTCTTTTTCCCCTCCTGTTTTGAGACAGGGTCTTTATGTCACCCTGGCTGTTCTGGAACTCCCTATTTGGACCAGATTGTTCTTTAACTTTCAAATCCACCTGTCTCTGCTGCAACTAAAGACATATGCCATCTCATCCTTCCCAGTCCTTTCCAGGAGAGGGTCCACTATTTCCAATCATATATCTCTGCCTCCCAAATTCTGAGATTAAAGGCATGGGCTACCATGCCTAGCTGACCTGAACTTTTGACATGAAGGATGGGTGGTAGGTCACTTGTTAGGGGCCACACTGTTGAATGTGGTAAGTCTCCCTGACCCTTAGGGACATAAGGGTCTTGGCTTATGATTATTACCTTAGACAATGCACATCCGGACACTAGGCCTCCATTATAAAATGGATTGAGACTGAGGGTCACATAGACTCCCAAAAGACTTCCATAGAATTCAGGCTGCAGTTGAAGGTGTTGGGGAATAGAGGATCAACTTAAAGGACTCAGGGCCTATATGAAGCCAGGTTCTTGAATACAGATGACTGGAAAAAGGCTGGCTGGCTAAGAGCTGGAGGGTGGAAATTAAAGATGGGGGGACTGGAGGCTCACATGGACAGACAGCTTCCTTCTTAGAACAATGCAAGGAAAAAGAATAGTGAGCAAGAAACACGGCCAAGTTGAGCTGAGGGCTAGGTTCCTACTCTACAGCCAGCTGGCCTGGTGTGGACACTTGGAAGGTCCACACTTCACAGCTATCTTCCAATAACCATCGTTTGTCTTCTAG
Seq C2 exon
GCAAAGTGGCCGGACAGTTCTTCAGCAACAACTCCATCATGTCTAATCCTGTGGCTGGACTGGTGATAGGGGTTCTGGTGACAGTCATGGTTCAAAGCTCCAGCACCTCTTCCTCCATCATCGTCAGCATGGTTGCTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-Slc34a2:NM_011402:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACACCAAAGGGAAGACG
R:
CAACCATGCTGACGATGATGGA
Band lengths:
262-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: