HsaINT0152513 @ hg38
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25664202-25666271:+
Coord C1 exon
chr4:25664202-25664330
Coord A exon
chr4:25664331-25666127
Coord C2 exon
chr4:25666128-25666271
Length
1797 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGTTTGTTTGTTTTTCCCAGGAA
3' ss Score
9.86
Exon sequences
Seq C1 exon
AGAGAGACACCAAAGGGAAGATTCTCTGTTTCTTCCAAGGGATTGGGAGATTGATTTTACTTCTCGGATTTCTCTACTTTTTCGTGTGCTCCCTGGATATTCTTAGTAGCGCCTTCCAGCTGGTTGGAG
Seq A exon
GTAAGAATGAAAGGGTGAGAGGTCTGCGGGTGAGGGGCATTATCTTGAAATGTGGTTCCGAGAGTAAAACTCAGCAAGCCCTCTCCAGCTGCAGCCTCCTGGAGTGTTTTAGGACTGGAACCGACCTCAGATCATTTATGAAGTCTATGCTTTCCGTTATAGAAGAGAAAACTGAGGCCTATACAAAGGGCTATGACTTGGCCCAGGTGGCTTAGGCCAGGAGCTGGGGCTAGACTATTCCAAGCTATCCGCCAGTTGAGTTTGTCCACAAACCCCAGGCAGGAAGTTGTCTGACATACAGACTTAGCTGAGGAATTCCTATATCCTCCACACCAGAGAGAATTCTGGAATGAGAAAGAGTGCCCTTTCAAATATGGGCCCTTGCTGGGGGAAGGACAGGGCCCCTTCTCTGGGCTGGAGGAATCTGCATCCATTGTACTTACCTTCACAGCCCTTAGGGCTGCGTGTGCCCATGCAGTGTGAGAACCCAGGAGTGAAGTCACCATGTGCTTGGTTCCCTTTGTACCTCAATGGTGATGTCAGAAACAAACAAGCAGCACTCCGTCTACTGGGTGCAGGCATTTTCGGGGGCCCTCTATCAAACATTCTTTCCCAGAGCCCTCCCATTTACGGAGAGATCATGAACCAGCCCTGAGACTCACAGCCTGTGATTAGCAGAGTAAGATTCAGTCTCAGATCTGGGTGACACAAAGGACCATGGATTTCTGCAACCCTTGGTGCCTTTCTTGGGAACCCATCTGTGTGACTTGGGAGAGTTGGGGAGGTGGGCATTCATGGGAGAGCATGAGGGGCAAACACTTCCTGGACATTGCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCGGGCTGGAGTGCATTGGCGTGATCTCAGCTCACCGCGACCTCCACCTCCCGGCTTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCGTGTTGGTCAGGCTGGTCTGCAACTACTGACCTCAGTTGTTCCGCCCGTCCTCCGCCTCCCGAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTCCTGAACATTGCTTCTGGGCTCCCTGGTCCATGGGAGCATCAGCTAGGGGCTTTGCTGTCTGGTTATCTCAGACAAATCACCTGCATCCTCTGGGCTTCCACCTTCTTTATACAATGGACTTGGGAATGCATTGATGGTCTCAGGTACACTCTTGAGAATAACTCTCCCAGCATTCAATTACAGGCTGGTGCTAGGGCTAAGGGTGGATAGAGAGATCTACTCTTGGAGGATAAATCTGAATTGGGTATACACCCCAGAGACATCCAGGAGGCTCATTGGAACCCACTGGTCCCAGTATGGAGTTGAGGCTGGGTTCCTGAGCACAGAAGGGCTTGCTGACTGAGGAGTGTTTGAAGAGTGGGAGGATGCAGGGTGAAGGAACAAAAGTAACCAGGGGCTCACAGTGGGTCGGGAACCAGGGCAGAGAGACAGAGACAGGAGGCACGTGTGGGCAGCTAGTAGATTTCCTGCCTTATCGGGGCAGCACTGGGAAGAGGCATGGGGAAGCAAGATTCCTTGGGTGCCTGCAGCGATGGAGGCTGGACTCTGCAACCCACAGCCAGCTGGCCTTGGATGGAGACTTCTGTTTACTCAGTGCCCACCTAATCCCCCTCGATCACGTTGTGATTGTTTTTGTTTGTTTGTTTGTTTTTCCCAG
Seq C2 exon
GAAAAATGGCAGGACAGTTCTTCAGCAACAGCTCTATTATGTCCAACCCTTTGTTGGGGCTGGTGATCGGGGTGCTGGTGACCGTCTTGGTGCAGAGCTCCAGCACCTCAACGTCCATCGTTGTCAGCATGGTGTCCTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765:ENST00000382051:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGACACCAAAGGGAAGA
R:
GAAGAGGACACCATGCTGACA
Band lengths:
271-2068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains