GgaINT0075049 @ galGal3
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2289283-2293265:+
Coord C1 exon
chr4:2289283-2289448
Coord A exon
chr4:2289449-2293179
Coord C2 exon
chr4:2293180-2293265
Length
3731 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGCACTGCTTTCTCTTACAGGTC
3' ss Score
11.83
Exon sequences
Seq C1 exon
GCAGCTCGGTGCCATGCCTGCAAGCGTCAGGGGAAGCTGCTGGAAACCATCCACTGGCGAGGGCAAATCAAACACTTCTGCAACCAGCAGTGTCTGCTGCGATTTTACAATCAACAGAACCAGCCCAACCTGGACACGCAGAAGGGGCCCGAGAGCCTGCTGAACA
Seq A exon
GTGAGTAGGAGGGAGGGAGGGGACCCGCATAGCTCAGTCTGAGAGACACAGGGAAGACCGAACAGCAAGGGGTGGAAGCTTCCCGCCTGGGACTGGATGAGACGCTAGGGAACAATCCTGCACTGGCCCTTGGGGGGGAAAGGACGGAGTGGGACCTAATGGGGCTTCTCCATCTCTAACGTCTATGGTTCTATGACACACAGGGCCCAGACGGGAGGAGCCGGTGCCAGCGTGCTGCCTGTAGCTCACACTCTTAGCGAGGATACTCAGGGATTTAATGGGCGATTCCATCCTCATGTTGCCAGCGGAGAGCTCGATTTGCAGGGTTAGGGGACAGCGTGGCTTGGCATGATAATCCACCTGCAGCCCCACACCACCTCCGAGCTGTGACCTTCTCAGATCTCATAAGCTAATCAGGATTGGGCCAGGTCAGTGCTTGGATGGGAAGCATTCAAGGAAAACACAGGGTGCTGCAGGAAGTGGTGCTGGTGATGCTGTAGGTGGGCTCTCCTCAGCCAGAGCCGAACCTAGACCGATCTTGAGGGAGCGCAGAGCCGCTGGAGGCACTCCGTCTTGTGAAGTTAGATTGGAGTCCTACCAAAAGGTTGCTGCAGCTTTGGGGAATTGCCAACCCCGTGTCCCGGATAACCCCATTCTGCATCCGTGGAGTTCCAGCTGGAGAGGAGATTTTCACTGCCTGTTGCCTCATTTCCTATCGTTAACTTGAGCCAATTGCTTACGGAAGATTGCAAAGTGCTTTGGGGTCCCTCAGGATGGAAGGTGCTCATAGTGGCAGTGACAAGACATCGCACGGCCCTTGGACACTCGCGTAGTTTCATTCTGCTTGGTCTTTCACAGGCCGCCATCTTCTAGGTGATCTATTTGATCTAGTTAACAAAATGCCTGCGGTTTGTGACGTGACTTCCTTCAGTTCATCAGGCTTCGACTGGTACCAGTATTGCAGGCTAAGGGCTTTGCAGCCCCCTGGGATTTCACGAGGTGTAAAACCCTGACTGGGGTGCACTGAGGAGGGGAAACCAAGAGGAGGACCTTCCCTTGAGAGACCTCATTCTCCATCTTCAGGCTCTTCTTGAGGCCTCTCTTCTGACAGCAGTGGGCAGATCGCAAGATGAGGGAAACCCTGGATGTCAGAACTGCTTCGAGAGCAAAGCAGAGCTGCTCTGCCAGAAGCAGACGGTTCCCCCAGCCAGGGGAGTCCCAACCTGTCTTCCAGGAGCCGTGCTCTGTAAAGCACCGTGTGAGGTGACAGCTCGAGTGGCGACACACTGAGGTGACCTGGACCAAAAACTGTTGGTTTCAGCTGGCACTGGGGTGTCCAGAGAGAGACTGCTTGATGGGGCACTGTCCTGCTGCCCCGGTGGAGGAAGAGGCATTGGGCTTGCCATCTCTTGTAGCTCACCGCGTGATTTTACAGCCTTAGCCTTGCTGTTTGATTTGTCCCCTGCTTTCAAGGCATCTTACCTATGAGGCATCAGTAACACTGCTGTGGGGACACAGGCACAGCAAGCAAGCCACTGCCTGCCAAGGGAGGCATCTATTTCACGCCATTTGGCCCTTGCCTCTTGGAGACACGGACCACAAGACTCTTAAGTACCCTCTCCACCACCACCAACTGGCAGGACCTGACCACCACCCTCCATCATGTCTCTGGAGGCCCCCAGGAGCTTTGCTGTTTAGCACTTGGTGCGTTGCCCTTCCCCGTGCTGCCTTTCTGTGCGCCTGCGAGGCAGAGGACTCTGAGGGCAAGCAAGGAAATGCCCTTTGGTAGTGGTGAGTGCTCGGCTGAGCACAATCTCCAGGCTTGGTAAAAGCCAAAGTGCACCGAGTCTTCTGTGTTCTGGTATGCCTGTCCTCTGCCAGCTGTGGGAAAGGTGTGGACAGCTTTGTCCTGGGACTGTGGTGTACTGGTCAGTTTGCACTGAAAGGGTGCTGAAGCCAGAGCTGCTATGTGCTTACACAGGGCTTTCCAGCCCAGCGGGCTGTGCAGGGTGTTTCAGGAGGAGCAGCTTGTCAGTGCTGGTGAGGAACAGCTTCTGCCTGGTCCAGCCCGGGTCTTCTGTGCACCTGGCAGCAGTGTTGCAAGCTTGCAAGGGACTGCTTGGATTTTAGGCCCATCTTGAGCATCACTGCTGACCGCTTGCTTTTTTTGCAGCCAGTAGTTGCCTAAAACCATTAATTCCATCAGCTTCTGTCTGCCTGGTGATCCTCAGAGAGCTTGCTAACAATAAGAGTGGCCACTCCTTCGCTCAGAACAGTGTGTGTGTAACAAGTGGTTGAGGAGCTCCTGCCATAGAACCGTGCCCCGAGACTTCCAAAGGGAACTGGTTCTGTTTAGGGCCGTCCAGCTGCAGAGAAGAGAGGGCTAGAAGTCATGCTTGGTGCAGTTTATGCCTTGGCAGCTCCTTGCTGGTGTTCTGAGTAAACACCAAGCCACAGCTTCCTTGAGAGCCCGGACACGCAGCGTGTGGAGCTTTGTGGTGGGAGGATTTTCTTGTTTCTCACAGGCCTAAACCTTCGGCCTGTGGGACATTAACCTTTGCTTTGATTGTGCTATAGCAAAGACTGCTTTTACTCTACTCCGCAGCTTGTCTTTCTCCATCCAAGCCGTCCATATCTCCCACCTAAACTTGCTGCCCGTCCACTTTGTGTGGGTCACGGGGAATTCTTGGACCCACTGAGATGGTTGCACACCCTGTGGCTGAATGCCCAGCTGTAGGCTGGAGAGCTTCCTTGAATGGGAACTTAGCTGTCCCCTCTGTGGCAGTCACCAAATGGGCTTTGCTGCACCTCCCTTTACCAAAGAGCAAAGTCCCTGGGATTTCCTTGGGACACAGAGCTGCACAGTGCAAGTGCCCGTGTGTTGGTCCTTGGGGAGTCTGGGTCTTTCCTGGGGGCCTATCTGTAGGATGTGCAAGTGGACCTCCTGCTCCATGGGGGTGCTCTGACCTGCTGCTTTCCTTGCAGGTGTCTCCTTCACACGCGGCCCACGGTGGGTCAGCGCTGTAGAAGGCAGTTCTTTTTCTCAGCCATTCAGGTAACCAGGGTTCACGGGAGGCTTGGATGAAGGTGCTCTTTTAGCTCAGCAGCCTCTGAGATGGGTGCAGGTGCTCTGCAAAGCAGGTGAGCTGGAATTATCATCTCAGCAAAGCTGATACTGTCACCATCTGAGAGTAGAGTCTGCCACGCACGCCTCTTATCTGCCGGTGATCCTTTCTCTTTTGCATCTCTAATGCTGGGCAAAGCTGTCTCTGTACTTTCTGGGATGCCTTGTAACACTGCTATTAGCTCTCTCACCTTCTTCCCAGGGATCTCGAAGCACTTTGCCAAGATATTATAGCAGGGAGATGGAGGCACAGGGAGGGGCCATGGCTCGGTACAGCAAGCCAGTAGGCAGAGCTGGGAATAGAGCCCTGGCGTCCTCTCTCTACAAGGGGCTGGGATTTCTCCTGACCTGCTGTGATGGGGATGGGGTGGACTACAAGGGAGCACAAATTAACATGGCAATGACTCGATTGTGGAGTTGTAGCGTTTTCAAAGGTGCTAGGGCTAGAGATTCTTGGAATGACTGACCGTTCCTGGAGTGGCCAGGAGTGGTTTCTGGGGAGCCTGTCACTGCCCTCTGGCCTGTGGCTGCTGCCACCTCCAGTCCCTGCAGTGGGACCCGTTAGCCGAGGAGCTCTTGGACTAAGAGGCACTGCTTTCTCTTACAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACGGTAAGGTCTGCTGGAGATAGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]