MmuINT0180486 @ mm10
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101412378-101413277:-
Coord C1 exon
chrX:101413112-101413277
Coord A exon
chrX:101412476-101413111
Coord C2 exon
chrX:101412378-101412475
Length
636 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCTTTGTTTGATTCCACAGGTC
3' ss Score
11.51
Exon sequences
Seq C1 exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGGAAGCTGCTGGAAACGATCCACTGGCGTGGGCAAATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGTTTCTACAGCCAGCAGAACCAACCCAACTTGGATACCCAGAGTGGGCCAGAAAGCCTCCTGAACA
Seq A exon
GTAAGTCTGGGACAGGGTTCCACTACTAGTACTGGCCTGGGCTTTCTAATTTTGGGTCCAGCCCCTTCTTCCTCAGATTGCAATTAATTACCCTGGCCAGAGTGCCTGGTATTGTGCTCCTTTTATCTTTTGGGCTCTTCCAGGTATTCTCGTTTGAATCTTCTCGGAGTGAGAAGTCTACTGGTTCTCTGTATGGATGTATAGTTTAAGGTGTACCCAGATAGGATGGGACTTGTGGATGTGGTTAGTGTTCAGAGAAAGGGAAGTACCAGTGTGAGCTTTACCTTTAGTGACACCGAGACCATTTCTAGAATGTTAGCCTTGTGCTGATATCAGCCATTCTACTTAACTCCTGAAGGCTGTCTAAATAGAAGGTATAAAGTGAGGGGGAGGAGGTGGTAGTATTGCTTTCTAAATGCAGTGTTTCATTCTTTTTGGTAGCCAGAAGAAGAGAATCGTCTTGGCTATTGTTTCTGGGGCCCAGAGAAGACTAGGCTTGGGGTAGGAAGGAAGAGAAATCCTAGACTTCCTAGTTCTCTTTAGTGTGCTCTTTCAGAAAATGCTCCTAGAAAAAAAAACTGGTGAGGTGAAGACTTAGTCCCTCCAGCAAGAGCATTTCTTTGTTTGATTCCACAG
Seq C2 exon
GTCAGTCTTCTGAGTCCAAGCCCCAGACACCCTCTCAAACCAAAGTGGAGAACAACCACACAGTGAGGACCCCAGACGAGAATGGGAATTTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310:ENSMUST00000063577:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGCCATGCCTGTAAG
R:
TGCCCAAATTCCCATTCTCGT
Band lengths:
257-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types