DreINT0181005 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21629332-21629627:-
Coord C1 exon
chr9:21629462-21629627
Coord A exon
chr9:21629364-21629461
Coord C2 exon
chr9:21629332-21629363
Length
98 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
TTTTTTTGGTCTGCTTACAGGGT
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCGGCGCGCTGTGACTGCTGTAAGGTACAGGGGAACCTGACGGAGTCTGTACAGTGGCGTGCAGAGTTAAAGCAGTTCTGTGACCAGCAGTGTCTCCTGCGCTTCTACTGCCAACAGAACGAGCCCAACATGGCTACACAGAAAGGCCCAGAAAACACTGCTTTAG
Seq A exon
GTAGGGTTTTACTCCCGGACCTGAAAATTTGCATGGATCATTCCATCATGTTTAAATTAAACCTTAAAATGAAATTTTTTTTTTTGGTCTGCTTACAG
Seq C2 exon
GGTTTGGAGGACCAACCCAAACATCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACTGCTGTAAGGTACA
R:
GATGTTTGGGTTGGTCCTCCA
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]