BtaINT0164723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36404667-36405968:-
Coord C1 exon
chr12:36405803-36405968
Coord A exon
chr12:36404702-36405802
Coord C2 exon
chr12:36404667-36404701
Length
1101 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
TTAAATTTGTTTGTTTTTAGATC
3' ss Score
10.02
Exon sequences
Seq C1 exon
GCTGCCAGGTGTGACTGCTGTAAGTCTCAAGGAGCCCTTCGGGAGAGGGTGCAGTGGCGTGGCGAGATGAAGCATTTCTGTGACCAGCACTGCCTGTTACGCTTCTACTGCCAGCAGAGCGAGCCCAACATGACGACCCAGAGGGGACCTGAGAACTTACACTACG
Seq A exon
GTAAGGGTCCCTTCAGGTAGTGACCTGAAAAGCCCGCTGAGCAGACCTGGATTCAGGGTGGTGGTAATAAACAGTTGATTTCAGGGTTAGTTTAACATCAGCTTCTGTGGTTTCTCCAGGTGGAAGTGCCTGCAGTGACGTTTTGCAGTTTGTTTTTTTACTCTCTTAAAAATTTAATGGTAGTTGATAAAAATAGAGTCTAGTTGGGGTAGAGAGAATCTAAACAGAATTATAACGAAAATTGTTTTTAAAAAATTTCATCTGCCTTGAATAGATAAAGAAATTTTGGTACATATATGCAATAGAATATTACTTATCCATAAAAAGGAATGCATTTTTTTTTTTTTTAAGGAATGCATTTGAGTCAGTTCTAGAGAAGTAGATAAACCTAGAGCCTGTTATACAGAGTCAAGTAAGTCAGAAAGAGAAAAACAAATATCATATAATAATACATATATATGGGATCAATAAATAAGGTACTGGTGAACCTGTTTGCAGGGCAGGAATAGAGATGTAGACACAGAGAACAGACTGCACACAGCGTAGGAGGGAGAGGGTGCGACAGATTGCAAGAATAGCATCGAAAACGTGACCATGTGTAAGATAGACAGCTAGTAGGAAGTTGCTGTCTAGCACAAGGAGTTCACCCAGCTTCTCTGTAACAACCTAGAGGTTCAGGAGAGAGGGCATGTATTGCTGATGTATGGTAGAAACCAACACAACATTGTAAAGCAGTTATCCTCCAATTAAAAAAAAATTTGCCTATTCACTTGCAATTTAAATGAAAACATTTTTCAGCAAATTGTATGTGCTCCAGGGTCGATAGGACAAACAGCAAAACCCTTTAGATGATGTGATTTATTTAAGAGTTAAATCTAAGAAAATAGTATTGCTCCCAAAGCAGTATATACTTTCTAATGGAACGAAAGGGGGAAAGAGTTAATTCCACAACTTAGCTCTGTATTTCAGCTCTCAGAAGAATATGAAATATTTCCATCAGTGACTATTTCAAAAAAATCCATAAAAATTAATGAGAAATATGGATTTAGAAAATCCTGAAGAAAGTGATATTTGTCTTATTTTAAATTTGTTTGTTTTTAG
Seq C2 exon
ATCAGGGTTGTCAGACGTCCCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGTGTGACTGCTGTAAG
R:
GGGACGTCTGACAACCCTGAT
Band lengths:
184-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development