MmuINT0180462 @ mm10
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56937510-56938439:+
Coord C1 exon
chr14:56937510-56937675
Coord A exon
chr14:56937676-56938404
Coord C2 exon
chr14:56938405-56938439
Length
729 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TAAATGTTTATGTTTTTTAGATC
3' ss Score
8.29
Exon sequences
Seq C1 exon
GCTGCGAGGTGTGACTGCTGTAAATCCCAAGGCACTCTGAAAGAGCGAGTGCAGTGGCGTGGCGAAATGAAACATTTCTGTGATCAGCACTGCTTACTACGTTTCTATTGTCAGCAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACCTACATTATG
Seq A exon
GTATGTCATGTGGCCACTTGAAAGCTTTTTATATTCTTAAAATAAAGAATCGCAAGCATTGGTTGATTTGAAGGTAGTTAGTAAGACTGGGTCCTGGCTCAGTGGCAGAGTAAGGATGATAGTTTATAGCCCTAGTAAGCTTCTCCCGAAAGAGGTCAGTTTTCTCATAGTTTATGTACAGATGGAAAATAATAATTGAAATAAATTCCATGCTTTCCCTAGGCCGAAGTCCCCTGTATGATAATGTTTTATAGATACATTGCTTATTTTATTCCCACTTAAAATCATGTTCGATGAAAAAAAGTATTGGGCATCATTGAGCTAAATTACAGAGAAATTAAATAGAATTAAAAAGAACTGTTTTAAAAAATAATCTATCCTGTGACAGCTAACTTCAAATTCAAATAAAAAGTTTCCTGAGCAGATGATGTGCTAGGTGTGGCCTAGAAGGAACAACAGAGCTTTTTAGAAGTTGTGGTCTTGTATTTTATTTAAGCAGCAATTCTTAGAGTATCGAATTTCCCCTAAAGCACATTGTACTGTGTTCAGAGAGGGCAGAGGGAAAATGAGTTCATCGTTCACTCACCTCCATAGTTCTTATACTGTTTGTAAATTTGGGATTGTTTCTTAAGATAGTTTTTCAAAATTGTAAAACTCCCTGATAAACAGGGATTTATAAAAATGTCAAGAAAGTGTATTTATCTTATTTTAAATGTTTATGTTTTTTAG
Seq C2 exon
ATCAGGGCTGTCAGACGTCCCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945:ENSMUST00000022511:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGTGTGACTGCTGTAAA
R:
GGACGTCTGACAGCCCTGAT
Band lengths:
183-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types