GgaINT0106899 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178291992-178293082:-
Coord C1 exon
chr1:178292917-178293082
Coord A exon
chr1:178292027-178292916
Coord C2 exon
chr1:178291992-178292026
Length
890 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
ATGTTTTCTTGCATTTTTAGATC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GCTGCGCGGTGTGACTGTTGTAAGTCACAGGGAACTCTCAGAGAGAAAGTGCAGTGGCGTGGAGAAATGAAACACTTTTGTGATCAGCACTGTTTGCTCCGTTTCTACTGTCAACAAAATGAACCAAATCTGGCAACCCAAAAAGGACCGGAGAACTTGCAATACG
Seq A exon
GTACGTGCTGCCTTGTGGCTGCTAAATGGCAAACAAAATACTTGCTTTAAACCAGAGATTCAAAACTGCTTCATTTATTTATTTGATATAACAAACTTGTCTGCCTTAGAGACCGCCCTTTTTTTATGTGATCACCAGAGACATTACTTATTGATCTGCTCTATGTTGCTTATCTTAACCTTTACTTAGTTGCTCTTTCGAGAGCTGAAATGCTTTCGGTAATTGAACTCTAAAATCACTTCTTATAAAAAAACAAACCATCATTCTGGTCATGGGAATGCCAAATGTTTTCCACTCTCATTGTACTCCAGTTTGTTATTAGTTGCTCTATGGGAATGTTTCTCTTCAAAGCACACTTTGGTCACAGATAGCAGATATACACACCTGGAATTAAAAGGAAAGAAGTAAATGGAATTAAAAGGAAATAAACGCAATCATAAAACAAAATGAAAGTATCCAGGCATGAGCAGCGTGTTGCCTTTTTGATCTGTTGGCAATAGGTGCCTTTAGTTTTCTGGTGGGAGCAGAATGGGTGTTTATGTGGGACCTAAACAGCATGTCAGCTTGGAAATAAATCAACTTCTCATTTAATTATGTTAACGCAGCTTATTTGTATGGCTATTTTCATATTTGAATATTTTAGTATTTACCTTCTGAATCAAGTTTTGCTTACAGCTGACTGTAGCATTGATTTGACTTTTGGCTTTATATAAGGATCAGTGCTGGCGTAGTGAGAAGTATGCCTGAGAAGTGTAGAGCTCAGTCCTTACCTGCCATACAGTGCTGAGCAGCACTGTTCAATTAATGGTACTCCAATGATACATGTTGACGTTTGCTCTGATACTGAAAGAGGGAGAAGAACTCTAAAAAATGTTTTCTTGCATTTTTAG
Seq C2 exon
ATCAGGGCTGTCAAACTCCCCGAACAAAAATAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGGTGTGACTGTTGTAAG
R:
TGTTATTTTTGTTCGGGGAGTTTGAC
Band lengths:
198-1088
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]