HsaINT0185978 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20625573-20626451:+
Coord C1 exon
chr13:20625573-20625738
Coord A exon
chr13:20625739-20626416
Coord C2 exon
chr13:20626417-20626451
Length
678 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
AATTTTTTTGTGTTTTTTAGATC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GCTGCAAGGTGTGACTGTTGTAAATCTCAAGGAACTCTTAAAGAGCGAGTTCAGTGGCGTGGGGAAATGAAACATTTCTGTGATCAACATTGCTTACTGCGTTTCTACTGTCAACAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACTTACATTATG
Seq A exon
GTATGTAATGATTTAGGTGATAACTTGAAAACCCTGTACATCAGTCTTTACGTAGTTTTGAATCCAAAGCACTGATAATGAATAGTTGATTTTGGAGATAGCTTAACAGCAACTTAAATTCCGTAGATTCTCTGGGTCGAAGTACCCTTGTATGTTGTTTTTATAAATGTATTGCTTTTAGTTTTATTGTCTTTTTGAAATTTCATGCTAATTGAGAAAAGGCATAGTTGAGAGTGAGGAGAAGCTAAACAGTGCTATAACACAAATTTTAAAAAGAATAGACATCTAACTATCGTGTCATCTGCAATTTTAAATGAAAATTATTTTTAGCAAATCGTATTGCTAGGGAGTAGGTTGGGAGGAAGAACAAAAACCGTTTAGAAGCTGTAATTTTTTTAAAAAAAATATCATTTAAGATATAAATCTAAGAATATATAATAGTATTTCCCCGAAAGCAGTGTATACTTTCAGAGGGGACGAAAGGAGAAAAGGATTAATTTCATTTATTTACCTGTATATTTCTATACTTTATACAAATTTGAAATTCTTTCCTTAAAATAGTCTAAAATATTTTCTTTAGTCACATTTTAAATTGGTGAAATTTAATGAGAAATAGGGATTTAGAACATTCTGAAGAAAGAGTATTTGTCTTATTTTAAATTTTTTTGTGTTTTTTAG
Seq C2 exon
ATCAGGGTTGTCAGACATCTCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGGTGTGACTGTTGT
R:
TCATTTTGGTTCGAGATGTCTGACA
Band lengths:
199-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)