RnoINT0169113 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37205912-37206128:+
Coord C1 exon
chr15:37205912-37206057
Coord A exon
chr15:37206058-37206093
Coord C2 exon
chr15:37206094-37206128
Length
36 bp
Sequences
Splice sites
5' ss Seq
AGTGTATTT
5' ss Score
-3.97
3' ss Seq
TAAATGTTTATGTTTTTTAGATC
3' ss Score
8.29
Exon sequences
Seq C1 exon
CACTCTGCATTCAAAGGGAAAAATTACTCACTTACCTCCATATTTTTTATACATGTTTATACATTTGGGATTGTTTCTTAAAATAGTTTTTTCAAAATTGGTGAAACTTACTGATAAACAGGGATTTATAAAAATGTCAAGAAAGT
Seq A exon
GTATTTGTCTTATTTTTAAATGTTTATGTTTTTTAG
Seq C2 exon
ATCAGGGCTGTCAGACGTCCCGAACCAAAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAAAATTACTCACTTACCTCCA
R:
GGACGTCTGACAGCCCTGAT
Band lengths:
152-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]