RnoINT0169137 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71307017-71307903:-
Coord C1 exon
chrX:71307738-71307903
Coord A exon
chrX:71307115-71307737
Coord C2 exon
chrX:71307017-71307114
Length
623 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GCATTTATTTGTTTCTACAGGTC
3' ss Score
10.9
Exon sequences
Seq C1 exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGAAAGCTGCTGGAAACCATCCACTGGCGCGGGCAAATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGCTTCTACAGTCAGCAGAACCAACCCAACTTGGATACCCAGAGTGGGCCAGAAAGCCTCCTGAACA
Seq A exon
GTGAGTCTGGGACAGTGTCACATGACTAGAACCGGCCTGGGCTCTTCTAATTTTGGATCAAGCCCCTTCCTCCTCAGTTTGCAATTAATTATCCTGGCCAGAGTGCCTGGTATTATGCTTCTTTTATCTTTTAGATTCTTCCACGTATTCTTGTTTAAATCTTCTTGGAGTGAGAGTCTACTGGTTCTCTGTAAGGATATATAGTTTAAGGTGGACCCAGATAGGATGGGACTTGTATGGATGTGGTTAGTTTTCAGAGAAAGGGAAGTATCAGCACACACTTTAGTGACACAGAAACCATTTCTCAAATGTTAGCTTTGTGCTTCAGTCATTGTAAGTGTACTTAACTCCTGAAGGCTGTCTAAATAGAAGGTATAAAGTGAGGGGCAGGAGGTGGTAGCATTGCTTTCTAAATGTAGTGTTTCATTTGTTTTGGTATCCAGGAGCACAGAATCTTCTTGGCTATTGTTTCTGGGGCCCAGAGTAGCCTAGACCTAGAGTAGGAAGGAAGAAAAATCTGACTTCCTATTTCCCTTTAGTGTGCTCTTTCATAAAACTCTCCTAGAAAAAAAAATGGTGGGACAAACAGTTCCTCTAGCAAAAGCATTTATTTGTTTCTACAG
Seq C2 exon
GTCAGTCTTCTGAGTCAAAGCCCCAGACACCCTCTCAAACCAAAGTGGAAAACAACAACACAGTGAGGACCCCAGAGGAGAATGAGAATTTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGCCATGCCTGTAAG
R:
CCAAATTCTCATTCTCCTCTGGGG
Band lengths:
254-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]