HsaINT0186003 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71246631-71247510:-
Coord C1 exon
chrX:71247345-71247510
Coord A exon
chrX:71246693-71247344
Coord C2 exon
chrX:71246631-71246692
Length
652 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCATTTGTTTTGATCTACAGGTC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCTGCCCGGTGCCATGCGTGTAAGCGCCAGGGGAAGCTGCTGGAGACCATCCACTGGCGTGGGCAGATCCGTCATTTCTGCAACCAGCAGTGTCTTCTGCGTTTCTATAGCCAGCAGAACCAACCCAACCTGGATACCCAGAGTGGGCCCGAGAGCCTCCTGAACA
Seq A exon
GTGAGTCCCAGGCAGGGGGTACACTCTGTTAGAGGGAGCCTGGACTCTCCTAATCCTAAGCCTAGCCCCTTTCTCCTTCCTCTTGCGTTCAGCTCACCCCTGGCCAGATAGGGTGCTAGTACTGTGAACTGTATTCTCTTTTAGCTTCCGAACCCTGCAGGTACCGGGGGAGTCTTATTTAAAGCTTCTTGGAGTTAGCATCTACTGATTGTCTATGAAATATATATTGTTAGGGAGTGGGTGCCTTTCCTGGTAGGATGGAGCATATAGGGGTTATGGTTACGTTTCTGAGATAAGGAAATCTCAGCATAAACTCTACATTTAGTGAGACTGAAGACTGCTATTTCTAGAATGTTACCCCTGCCCCTCCACAACTCCAGGGATAACAGACTCTTCAGGCTATCTAAGTGGAAGGTCTCAAATGTGGGTTTTGGGGGAAAATGTAATGTTTCATTCTCCAGGAACAAATAATCTTTTAGGCTGCTATTGCTGGGGCATAGAGGAGACTAGATCTGGGATGGCAAGGGGGTCAAATCCTAGAAGTTCCCATCTGTATTTGGTGTACCTGTTAATGAAGCTCTCCTGGAACAGGGGTAAGGAAAATGGAGAGCTAGTCCCTTGGATGAGAGCATTCATTTGTTTTGATCTACAG
Seq C2 exon
GTCAGTCTCCTGAGTCAAAACCCCAGACACCCTCTCAAACCAAAGTGGAGAACAGCAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGCCATGCGTGTAAG
R:
GTGTTGCTGTTCTCCACTTTGG
Band lengths:
222-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains