GgaINT0077028 @ galGal3
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64969617-64971343:+
Coord C1 exon
chr4:64969617-64969666
Coord A exon
chr4:64969667-64971142
Coord C2 exon
chr4:64971143-64971343
Length
1476 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTTTCTTGTCTTGCATTAGGTA
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTTTTAATTGAAAAAGACTGGGTTTCCTTTGGTCACAAATTTAACCACAG
Seq A exon
GTAAGGCCATGCAAAGGTTTTTCTCTCTGTATATATTTTATGTTGTCATTATCCACTGCCATTCCAATTTAAATTTACATGTTGTCATTCAACTCATATCAACAAAATGCCTTGAGCATATTAACACATTCTTTTCTCCCACTGTATAATTTAGCTGCCTGGAAAAATTGAAGTGAAATATTTTCACATTTTTTCATATATTTCCTATATACGCACTCAAAGGTTGCTGTTGGGAATACTGAGTACTGGTCTTGCAGTTGCTATGAGCAATGAGAGATGCATGTGAGAGAAAAATATGTGGCTTGTAAAATGCCTTTGGAACCCAGCACATCTTTCAGTAATGCCAAGACTTCCCCTTTCAGGAAAGCATCCATCTTCCAGGGTAGTATTAATAGATAACTCATAAGCATGACTACAACTAAGATATACTTATCCTATTATGCTTTTTTCTCTGGTGAAAACAGTAGCATTTGTTCAGAAATGTCCAGATATATGACTTTCTTATTTCCTTTACCTGACAAGTTATCTTGGGCATCTATAACGTAATACTGATTGATATGAGTATAAATTTATCTTCTAGTTAAAAACAAAACACATGTTCAGGAAATCTGTGCAGTGCTACAACACCTGTGAAATTCCAGTAGGAGAAATAGAGGTTTCAATTTTAGATGTTGATGGACTTTCACGGCATTGGCGTACATGTCATGTTTGTGTGTGTGTGTGTGTGTGTGTATACAGATATACATACTATATACATATATATACACATATATGCTATATACACACACACACACACTATACATACATACTAACCAAACAGAATAATTAAAAATGCTTCTTCCTATTAGGTGGACTTACAAAATACTGTTTTACTTCTGTGTTATATATTTCAGGCTTCTGTTCTTCAAGGTCCCCTACAGCAAGTGGTTCCAACAGACAGTTTTACAGATAGAAAGTTTCCTGTTCACATGATAGATACAGTAGCATGTAAAAAATTTCCCACTTTCTAAAAACATCACTATGAGAGGGCAGCTTTAAACTATTTCCTGCCAAGGTTATTCATTTTGCCTCCTGCTCTGTTTTCTGGGTCTGGCATTGGTCTACCATTGAGAGGCTGTCTGGGATAGCTCGCTGAAGTCACTGCAGTTATTCTTACCACGACTTCTGTTAGTGTGGCACAACTGTCTAGTAATAAGGTTGAAACATGGCTTTGTAGCAACCAGCTGTAACTCACTGTGAGGCAACAGGACACCTGTAAAGGTCTTTTGTTCCTGTTTGATAAGTTCTGCTTTCCTTCTACTTGATGAGTCTTGCAATCATTTTTGTAAGTAAAAATATACTCATGGTTGAGATTTTAGAAATTAATAGCTACAGTTTAGCTAGTATGCTGAAATGAGAGTCTTGTTTTCACTAGTGTTAATTCGATTTTCCTAGAGGATTTCAGGTTATAATTGAATGTTTCTTGTCTTGCATTAG
Seq C2 exon
GTATGGCAATTTAGATGGAGATCCAAAGGAGATATCCCCTGTTATTGACCAGTTCCTCGAGTGTGTCTGGCAGCTAATGGAACAGTTTCCTTGTGCCTTTGAGTTCAATGAGAGATTCTTGATCCACATACAGCACCACATCTATTCCTGCCAGTTTGGTAACTTCCTGTGTAACAGCCAGAAGGAGAGACGAGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
NA
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGAAAAAGACTGGGTTTCCTT
R:
TTCAGCTCTCGTCTCTCCTTCT
Band lengths:
246-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]