RnoINT0095418 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54845985-54848604:+
Coord C1 exon
chr16:54845985-54846034
Coord A exon
chr16:54846035-54848403
Coord C2 exon
chr16:54848404-54848604
Length
2369 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TACGATACTTTGTTTTATAGATA
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGTTAATTGAAAAGGACTGGATTTCCTTTGGACATAAATTTAATCATAG
Seq A exon
GTAAGCATTATGTTTTTCTTTCATTGAAAATAGATTTATTTTTAATATACTATATCCTGATTCATTTTCCCTCTCTACTCTTCCCAGTTCCTCCCCATACTCCTCCCTATGTATCTAACTCCTTTTTACCTCTCATTAGAAAGCAAACAGGTATCTAAGGGATGATAATAAAATAGAAGTTAAACAAAAAATAACTAAGTTGAAATAAGACAAAACAAACAAAAGGAAAAGAGCCTAAGGTACAAGAAACAGATATAGACACAGAGGTTTGCACATTCAAGAATCTCTAAAAACACAAAACTGGAAGCTGTACTATATACAAACCTGTACAGTAAAGAAACAATAAAAGATAAAAAAAAAGAAAAAGAAAAATCAACCCCCCTGGCATAATGTTAAGCGACAAGGATCCTCCAAAGATGCTCTTGTCTTCTGCTGGTCACGTGCTGCTGGACATTCAGTGCCCTTAAGAGTAGTTTGTTTCCCTAATGAGATTCCCCTGGATGAAACTTAAATTTCCATTTGCAAGTGGTTAGCAATTGGAGAGAGCGTGTGGATTAGGGATAGGAACATGTACCCTCTTCCGTTCGTTCTAGGGTCCCATCTGGTGCAGGTTACCTCAGTCTCAGTGCATTCATGTGTGCTGTATTGATTTAGAGGGCCTTGTTTTCTTGGTGTCCTTCCTCCAAATCCTTATAGTTCTTACAGTCTTTCTGCCACCTCTTCTACAGGACACATACAATTTAGGGCTGAGTGTTCTTAGGTCTCTCACTCTCTGCGTATAGTCTGGCTGTGGGTATTTGCATTTTTGCCATCTCTGATGCAGGAGAGCTTTTCTGACAATGGCTGAGCAAGTGCTGACCTATAAGTCCAATAGAATGCCATTATGTGTTATTTTATTGCAGTTCTTTTAGTAGAACAGTAGTAATTGGTTTTACCCTAGATCCTTGGGCTGTCCAGTCTCAGGATCGTAGTTATGCAGGCAGTGTTCAGTATGGACCCCATCTCAAGGAGTGGGCCTAAGTCACATCAGATGGTGGTTGGTTACTCCTACAAGTTCTGTGCCCCCATTACACTAGCACTATTTTGTAGGTAGGTCAGCATTGTAAATCCAATGGCTTGGTGTCTGTTTCTCCTTTGGTAGCATACAGAATACCTTCCTGGACTCAAGTCACTAGGGTGTAGGCATCAGTCTATTTTGTAAGATTCTGCTGTGATATAAGATTTGCTGTTCTGCATTACTTATTCCTTGTTCTTTGGGCGGGGAGGGGTATGGTTTTCTTCCTTAGATGGAAGTTTTCCTTCTAGTGCTTTCTGTAGGACAGGATTTGTAAATGGATACTGCTTAAGTCTTTTTTTTTTTTTCTTCCACCTATGTTGATTCAAAGTTTTGCTGGGTATAGTTGTCTGGGCTGGCATGTGTGGTCTCAGGGTTTGCAGAACATCTGTCCAGGCCATCTGGACATTCTCCCATTGAGAAGTTAGCTGTTATTCTAATAGGTCTGCCTTGATGTGACTGTGTCTTTTTCCCATGCAGCTTTTAATTTTCTTTTGTTGTTGTTGTCTCTCTAGTGTTGTATTGTGTACCATGGGAAATTAACTACTTTTTAGTCCTCTTAGGACGAATGGAAACTGCCCAACCAGATGTGATCCTGGTGAATGTGTGAATTCTCTACCTTACATACTGAGGAAGGTTTCCCCCTGAACCTGGAACTCTGATCATACTAGTCTAGCTACTGAGCCTTTAAAAAAACCTAGTGCCACATAGGGCCACTGGGGGGTCCCAAGTAGAGTGTGCTTCCAGCCACCAGGGGCTGACAGAGGGATGGGGACTGTAATGGGACTCAGAGGCAGGGAGGGCTGGGATAGCCACAAGGAAGGGGAACCTGGTCCCAGAGCAAGGTTCAGCGGAGTGGCACCTTCAAGCAGGCTGCTACAGGTCTGGGGATGAGACCCAGGGTTATTTCTAAAAATCATTCACTAGCAGTCTCAATAGAGAAATGTGACTGGGAACAACACTGCAATGTTGGATCTGTGGTCAACTCTGCTGAAGAAATGGTCTTTACAGCCAGTAACCCAGCAAATGTTAAGAATTGCTTTACAATTGCTTCTGTATCAACCTAACAAACCTCAAAAGTAAATTTGGAATAAAAAAATATTATTTGTCCAGGAAAAGTTACTTGTCACACACATTCTCTTTCCAAACTTTCATTACAATCTTTATCTTTTAACTGGAATTTTAAAATTTATTTTCGTATTTCATCCTGTTTTTTTATGATTTACTTAGGAATTAAAGTGGCTTTTATGATAATCTTTGCATTTATAGCTTTCTAATTCAAACAAAAAAACTCATACGATACTTTGTTTTATAG
Seq C2 exon
ATATGGCAATTTAGACGGTGACCCAAAAGAAATCTCTCCAGTAATTGACCAGTTCATCGAGTGTGTCTGGCAGTTAATGGAACAGTTCCCTTGCGCCTTTGAGTTCAATGAGAGGTTTTTGATTCACATTCAACATCATGTTTACTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGACGAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
NA
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]