Special

MmuINT0102001 @ mm9

Intron Retention

Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41643510-41646260:-
Coord C1 exon
chr8:41646211-41646260
Coord A exon
chr8:41643711-41646210
Coord C2 exon
chr8:41643510-41643710
Length
2500 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TAGAATACTTTGTTTTATAGATA
3' ss Score
5.85
Exon sequences
Seq C1 exon
GTATTAATTGAAAAGGACTGGATTTCCTTCGGACATAAATTTAATCATAG
Seq A exon
GTAAGCAATATTTTTTTCATTGAAAATGCTTATTTTTAATATACTATATCCTGGTTACATTTTTCCTCTCTACTCTTCCCAGTTCCTCCCCACACTCCCCCATAGGTATCTAACCCCGTTCTACCTCTCGTTAGAAAACGATCAGGTATCTAAGGGATGATAATAAAATAGAAGAAGATAAAACAAAAATAAACACATTGAAATAGGACAAAACAAATAAAAGGAAAAGAGCCTAAGAAAATTCTAAGAGAATATAGAGACTTACTCATTTGTACACTCAAGAATCTATAAAAACACAAAACCAGAAGCCATAATATATACAAACCTGTTTGGTAAAAAACAATAAAAGATAAAAAAACAATTTAAAAGATAAAAATGGGAAAACAAACAAACAGCCCTGACATGACATGAAGAGACAAGGCACCTCCAAAGATGCAGTTGTTTTCTGTTGGTCATCTACTGCTGGACATTCAGTGTGCCTTAAGAGTACTGTTTCCCTAATGAGATCCCTTGGATGAAACTTAAATTCCCATTTGCATGTGGTCAGTTGGAGATAACTTGTGAATTAGGAATAGGAACCTGTACCCACTTCTTTTAGCTCTAGGGTCCCACCTGGTGCGGGCCGCCTCAGTCTCTGCATTCATATGGGCACCATATTGATTTAGAGGGCCTTCCTTGTTTTCCTGGTGTCCTTCCTCCAACCCTCTAGTTCCTATACTCTTTCTGCCAGGATACATACTATTTAGAGCTGAGTGTTCTAAGGTCTCCCGCTCTCTGCATATTGTCTGGCTGTGGGTCTTTGCATTTTTTGCTGTCTCCGCTGCAAAAGAGAGCTTTGCTGATGATGGCTGAGCAAGTACTGATCTGTAAGTACAATAGAATGCCATTATGTGTTATTTTATTGATGTTCTTTTAGTAGAGCGGTAGTATTTTGTGGATGCTTTGTGCCAGGATTGTTTTAGATTTAACATTTTCTTTGACCAAGGTATCCATTTCTTCTATCTTGTCTTCAATGCCTGAGATTTCTTCTATATCAATTTCTCTTGGAAAAGCCAGCCTCTACTCAAGCTCTTAAATTTTGTTTTCAGACAGAGTTTCCCTGTGTAGGTTTGGCTGTCCTGGAACTTAACTCTGCAGACCTATCCGGCCCCAAACTCAGAGACCCGCCTGCCTCTGCCTCCTAACTACTGGGATTACAGGCGTGCGCCACCACCGCCTGGCCGTCAAGTTTTCATTTCCAGATTTCCCTCAGTTTGGGTTGTCTTTATTGGTTACACTTCCACTTCCTGGCTCCAGCTGTTTTGTTCATTTCCTCCCACTGTTTGTGATTTCTCAGACTTAAGGGGTTTATTTGCTTCTTTAAAGATCTCTATAATATTCCTAAAGGGTATTCTAAGGTCTTTTCCTTGTGCTTCAGCTATGTTGAAATACTCAGGGCCTGCTGTGATGTGGTTGCTGGGCTCTAGGGAGACATGCAGTCCTGGCTGTTACTGTTTTTATACTGGTGTCTGGGCTTCTGAGTTTGGAATGATTATAATTCTAGGTGCTGACACCTGGAATTGTCTTTGGTTGGTGGGTGTTTTGTTCCTTGGTTTCTGTTGTCTTCTTTAGTTCTTAGGAGTGTGGCTGTGGTTGCTTGGTAGAGAATGCTTGTGCAAGTCTATGGGTGGCAGAAGGGATTGAACTGGGTAGGAGAAAAGGCTGAAAGGGGTTTCAGGAGAGAGCTAAGGGGATCCTGTTCAAACCTAGAAGTGGGGTCCACCGTAAACAAGTGTGACCAGGAGACCAAATCTTGTAAGTAGGCTGTTAAAGGAGAGAGAGGTCCTAACGGAGGACAGGAAGAAGAGTATAAGTTCCTTCCCAAAGACCCTGCCAGAAACGGCCACTAAGGTGCCCCAAGGAGAGAGTGCTACTAGGCATCAGGGGCTGACAAAGAGCAATGGGAATCGTAATGGGACATGAAGGGAGAGCTGAGATGTCCACAGGAAAGAGGACAAGCTGGTTCCACAGCAAGGTTCTGCAGAGTCCCCAGAGTGTAAGTAGGATGGGAGGAAAGGCACCTTCAAGCAGGCTGCTACAGGGCTGGGGATGAGACCCAGGGTTGTTCTAAGTCATTCACTGACAGTCTCAATAGAGAACTGTGAGTGGGAGCACGGCTGTGTGGGGTCTAGGTCAGCTCTCCCTTTACAGCTAGCCATGCAGTTGCTTTAGAATTGCTTCTGTATCAACCTAACAAACTTCAAAAGTAAACTTTTAATTAAAAAAGTATAACTTGTTCAGGAAAAGCTTTCTGTCTCACATATTCTCTTCTCCATCCAGACTTTCATTACAATCTTTATCTTCCAATTGGACTTTTAAAGTTTATTTTCCTATTTCATCTTAAATTTTTATAATTTACTTAGGAATTAAAGTTGCTTTTATGATGATCGTTGCATCTATAAGTCTCTAATTAAAACAAAAACCTCCTATGTTATAACGTCTAGAATACTTTGTTTTATAG
Seq C2 exon
ATATGGCAACTTAGATGGTGACCCAAAAGAAATCTCTCCAGTAATCGACCAGTTCATTGAGTGTGTCTGGCAGCTAACGGAACAGTTCCCTTGCGCCTTTGAGTTCAACGAGAGGTTTCTGACTCACATTCAGCATCATGTTTATTCCTGCCAGTTTGGGAACTTCCTGTGTAATAGCCAGAAGGAGAGGCGAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-Mtmr7:NM_001040699:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.010
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF066029=Myotub-related=FE(4.7=100)

							
A:
NA

							
C2:
PF066029=Myotub-related=PD(19.2=97.1)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000043851





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000043367, ENSMUSP00000134281, ENSMUSP00000134731
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr8:17305958-17309276 
ALTERNATIVE
HsaINT0106304
(MTMR7)
Human
(hg19)
chr8:17163467-17166785 
ALTERNATIVE
HsaINT0106304
(MTMR7)
Rat
(rn6)
chr16:54846035-54848403 
LOW PSI
RnoINT0095418
(Mtmr7)
Cow
(bosTau6)
chr27:19006325-19008506 
ALTERNATIVE
BtaINT0096143
(MTMR7)
Chicken
(galGal4)
chr4:62732527-62734002 
ALTERNATIVE
GgaINT0077028
(MTMR7)
Chicken
(galGal3)
chr4:64969667-64971142 
ALTERNATIVE
GgaINT0077028
(MTMR7)
Zebrafish
(danRer10)
chr14:30069000-30069090 
LOW PSI
DreINT0098741
(mtmr7a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"