GgaINT0078180 @ galGal3
Intron Retention
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92997900-93000789:+
Coord C1 exon
chr3:92997900-92997902
Coord A exon
chr3:92997903-93000656
Coord C2 exon
chr3:93000657-93000789
Length
2754 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
3' ss Seq
TTTTTCTTTCTTCTTTTCAGGTC
3' ss Score
14.06
Exon sequences
Seq C1 exon
TTT
Seq A exon
GTAAGCAAATCCTTCAGCCATCGTCCCAAGTCCCTGAAGTCCCTTTTGATAGCCCTGGATCTACATGTTAGCTGCTTCATCTCTCCCTGTATGGAAAAGGAGTAAGAGGTTGTGGTCTGTTGGCTGTACCAGGCAAGGTAGTTTCCTAGTGTCATCCCAGCCCCAGGAAGACAACAGACTTCTCTAAGATGAAGGTCTGCTCAGCAAATTGGTTGTACAGTTCCCTGCAGGGAAGAATCAAGTACAGACCCATCTCTTCTTCAATTTGGATCAGTTTGGATCCATTTGATTTAGCAGTGAAATCAGTAACAAGTGGGGAAAAAGGAAGAAGCAGCAGAATGACAATTCAGCAGTTACAGTATTTTCTGATTGTTGTATTCTATGATAGCAGAAAAATGTCAGCCTTGAGAGCTGTAACATGAGAGCTCAGTCTGTGTATTCTAAAGGCTAGTAAGGAGCTGAAGCGTTAATTTTTACACATGCACTCTTAGGCTGAGGACTTCTTTACTTCAGCTTTGACATCTCAGAAGTGAGGCTTTTAAAAATGCAGGTACTATCTTTTAAATATTGATATACTTGGATTTCTTTGTGTGATCATTTACTAGACACTGAATGTCTATAGGTTGCTTATTCTCCATTGAAGAACTTATAGTTAGGAGGACACAGTAAATTTCAGACCAACACTGGTAATAACATCTGTTCATATACTGTCAAATTCAATAACATTTTTTTTTAAGTGTTATGTTCATAAATATTCTGCTGAGGTAATGATCTCACATGTCCTCAAGCTGAAGACTTAACATATTTCAAATTACTTCCTGCCTTTACACTAAACCAGAACTGTGCATAAACTCTGTATGCACTGGTGCATATAAAATGTAATATAAAATTTGTCACCTGCGAGCATACTTCAAAGAGCAGCATTTCATTAGAAGTACTTGGTTAAGTGTGAAAGACCAAGCTCTTTGAAGAATTTGCTATCACACAATTCTAGAGAAGGACCAGGCTGGGTGGTATGCTCGTTCTTGGAATATCATGAAAACTGAAAAAATTGTAGTTTCTAAGTACTGTTTGTTCTCTTTCCGAATCAGTTCTGTTTGTTTCTAGTCTTATATAATAGCTTAATGAGAAAACAGATCTCTGTTATCTGTCTGCCAAAAGAATTAGAACTTTAAATGATTTAACCTGTTTTGCCACTACTGTGAACTTTTTTTGTTTGTTTGTTATCTTTTAATATCTTGTTCTGTAAGGTCTGCAAGTCCACTGTTAGTTTCTGTTTCTTTAGTTGCTGAATGCCTATGCCTTACCTCTAGACTTCTAGATTTATATTCTAAAATCTTGGCTATTTCCATTTCAATCTGAAGTATTGTAGAATCATAATATCATCTAGGTAGGAAAAGACTTTCGACATCAAGTCCAATCATCAACCTGAACTATAGATTCCCATCACTAAACCATGTGTCTTAGTGACGCATCTCTTAAATATCTCCAGAGATGGGGACTTCACCACTGCCCTGGGCAGCCTGTTCTAATGCTTGGTCATCCACCCCATTAATATTTTCTTTCTGATATCTAATCTAAACCTTTCTTGGCACAACTTGTGATTGTTTTTTTTTTTGTTTGTTTGTTTTTTTCTTGTGTCCTATCACGTGTTACCTCAGAAAAGTGACCAGTACCCTTCTTGCTGAAACCTCCTTTCAGATACTTGTAGACAACAATGAGGTCTCCACTCAGCCTCTTCTCCAGACTAAATAGCCTCAGTTCCCTCAGCTACTCCTTCATATGTTTTATTTTCTGTCCCTTCACCAGCTTTGTTGCTCTTCTCTGTACATTCTTGAGCAACTCATTATCTTTCTTGTAGTGAGGAACCTAAAACTGAGCACAGTATTTGAGGTGCAGCCTCACCAGTGGTGAATATTTAGAGGGACAATCCCTTGCTTGGTCCACCTGGCCATGATTTTTCTGATGCCATCAACTTTCTTGGTCACCTAGGCATATTGCCAGCTTATGTTCAGCTGGCTATCAACCAGCACCCCCAGGTCCTTTTCTGCCATACAGCTTTCCAGACACTCTTCTCCAAGCCTATACAGCTGCACAGACTTGTTATGACCCAAGTGCAGGAGTTCCTGTCCACAGTAAGAGAGTTCACAATATAGGTAAATGGCTTTGCAATCTCTGCATGTGAGTTTTATACCAATGAAAAAGCTCCTGCTGGATGCTCTGAACCTCATGTCTCACCTCTTGAAGGAAACTGATACAGCCAGGACACATAAACTGGTGCTCAAGCACTGCTGAACCTAGGAGAACCAATGTGATTTATTGCAGTTACCTCAGTTCTCCTATCCTTTTCCATATTTTATGTAGTCACTCATAGCAGGATGCTTCTAAGCTAATATTAAGGATACAGCCATAGCATAATTTTTTGCAGTGTCAATCATTTGTTGTAGAAGGTGTAGGGCTTAATTTTATTCAGATTCTGATAGATGTAGTTTATGACTATGAAATTAAGTTGAAACAAGTATCATCTGCTGAATACTCTTTTCAAATCATTTTCATATTATCAATTATACATCGTTCAGTGGTATTAACAAGATATGACATGATACTGCATGTCATATACTGAATATTTTTAAATAGAATGATTTTATCAAGTCAGGATTTTCTTTTTGAATAAAAAGAGAATTCTGGGATAGAAAAAAATAAGAACTTTATTTCTGTCCTTTTTTTTTTTTTTTTTTTCTTTCTTCTTTTCAG
Seq C2 exon
GTCCCTTAAGTGCAGACACAGACCTTTCAAATCACTATTATGGTACAAACAGCAGTTCTGTTGCAGCTGCCATCCTGGTACCTTTCTTTGCTCTAATATTATCAGGGTTTGCATTTTACCTCTACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341:ENSGALT00000036950:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]