GgaINT0078391 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWX6]
Coordinates
chr3:44694119-44695994:+
Coord C1 exon
chr3:44694119-44694267
Coord A exon
chr3:44694268-44695900
Coord C2 exon
chr3:44695901-44695994
Length
1633 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
TCTTCATTATTTTTTTACAGTAT
3' ss Score
7.75
Exon sequences
Seq C1 exon
ATTGCATTCATTCAAATGGTATAGATTATCGTGGTACAGTAGCAAGAACTGCAAGAGGCAGAATTTGTCAAGAGTGGAGTTCTCAGACACCACATAAACACGACTACTTCACTCCAAGGACTCATCCAAAATCAGGCCTGGAAAAAAAT
Seq A exon
GTAAGCAGTTATTCATTTCATACTTCCTATCATTGAGCTTTTCCTGTCTTTTTTTGTGGTCCCTCAGTAAGCATTTTATGCCAAGTCTTTGTAAATGATTTTCCTCAGTTCATTCCAAGCACCTGATCGTGTTAATTCTTGTTGACATGAGCAGACTGTTCTTCACTGGAACAAACAGAGATGCCTAGCAGCAATGTCAAATACTTTTGCAGTATAGCCAAAGGGCTTTGCATGAGCGTTTGTTTACTCCCACTGCTGAAGACTATCTGGAGTTGGTCTTTGGGCAGTACTTTTCCTCCTCTGACAGAAAAAACACCTAGGATAATACGTTTCAGTAGCAACAGCAACAGGTGAGATGGTGAGGGATTCAAGTTCAGTGCAAGTTCCTTCGGCTATACACCTGATAGATTGCAGCCCTCAGCCTCTACTAATTCCCTCCTCCACAGAGCCCTCCAGCTACTGCCGTAGACTATCATGCATGGATATCCATGCTTCTGACCCATTCTGTAACTCACTCCCCGTCTATAACCTTCATCTCTAACCTAGTCCTAATATAAGTACCCATTAAAAGATCTGTTTCTAGCCAGTGGCCACTAAGACTTGTAACATTCTATATACAGTACTTGTCCAGTTTGTGACAAGCAACATATACGATATAAAGAAGTTGTTTGATGTTGCCAGATATTGAATGATTATTTTCTCCATGCACATGATTTTAGACACTGTTTTAGCCATTTATCTGATTGCATCACATAGCCTGTATTGAATAACGGCTCAGACTGGGAAAATGCTCTATGAAAAGATTCCTGTCATAACTTACTAGTTCTTGAATAATCAGTTGGGATTCCTGTGAAATGGAAGCAGGTATCCTATTCTTTTTCCTAAGATATGTGGTTATAATTCAGAGTAGGGAAGCTAACTAGAAAACTATCTGTTGTAGTATTTCTTAAATTGCAAGGAGTCTGAAATGGGAATTCAGAATCCAGGAGTTCATACTGCTTTCTTCCTACCAACTCCTGTGGACAGTGTGGCAAGCTGTCTCTGTCCATGCCTCTTCTCCTCTCCCCTCAACATTACTGAACAATTAGTTCTGGGCAGGGCAGAGAGGATGAAGACGCTCTGAAAGATCAGAATTGTGTTAAGCCTGTAGAAGTGAGATCCTGCTTCAGGGCCAAGTGGTTTTACTTGCTATATTTTAGGGTGATCACTGAACATACAGGCAGATGGTGGGACTCACTTTCAGCTGACAGTGACTAAATTCACATTCCTCCATATGAGTGCATGCAGTTGTGTGATGTGTCTGCTCTCAATGGAGATCAGACAGCGTGGCCAGGGAACCCTAAACAGTAATTCAGCTAACTAGGCACCCTGTGTGAAGATGAAGACTGCATCCGTGCCCTGGGACTCATAGACATCACCAAGTTGTGCAAGAGCAGCTTATGCAATTCCTGCTTTCCTCACAGTCAAGCAGAGCGGATGTGAAAAGACCTGAGAGCTGATGTTACAGCTCCTACCAACTGCAGTGGAAGTGGAAATAGGCACTGTAGTGCTCTAGAAATCCCCACTGTAGGACAAGATCAGTAAGTTTTTTGTCCTCTTGTTAATAGCTAATGTCTTCATTATTTTTTTACAG
Seq C2 exon
TATTGCAGGAACCCTGATGGAGATGTGAATGGACCTTGGTGCTACACAACCGACCCAAGAAAAGCCTGGGAGTACTGTGACATTCCCAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293:ENSGALT00000006829:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATTATCGTGGTACAGTAGCAAGA
R:
AGCACTTGGGAATGTCACAGT
Band lengths:
222-1855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]