MmuINT0122220 @ mm10
Intron Retention
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12404013-12405265:+
Coord C1 exon
chr17:12404013-12404161
Coord A exon
chr17:12404162-12405171
Coord C2 exon
chr17:12405172-12405265
Length
1010 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
AAATGCCTGTCTCCTTTCAGTAC
3' ss Score
8.83
Exon sequences
Seq C1 exon
ACTGCATGTATGGGAATGGCAAAGACTATCGGGGCAAAACGGCCGTCACTGCAGCTGGCACCCCCTGCCAGGGATGGGCTGCCCAGGAGCCCCACAGGCACAGCATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAAC
Seq A exon
GTAAGACACTCTGGTTCGAGTTCTGTTATATGTTTTCCTGACCAACCCTTGAACAGATTTAGTCTGGGGTTACACCAACCTGCCTGGACTGATCTTTGGTGTTGAGGGAAAAGAAAGGGAGGGGAAAACTGAAGTAGGTTGGGGTGGGGAGGGGCCAAAGCTGAGGCCACAGCTGGGTGTCCTACAATTGACTATTCTGACACTGTTTGGGAATAGACTTCTGGCCTCACTATTGTGCAGAGATGCATGCAGAGAAGTGTGGAGAGATGAGAGTCCTGTTCTCTCTGGGAACTCTCCAACACTCCCAGGAATCTCTTGGAATGTTTTTTTTAATTGGAAGCTTTGATATGTTGATATGGTTTTTCATAGTATTGGCCTTTGGTGCAGTGCAACATGCCCTCTTCCTCCTGCCGGGGTCAGGGGATAGGGCTAACATTCTAACACTTTGCCCATAGTTGGCTCTGCTGAGCACCCTCCACCCGGCACTCTGGGCTTCTCTGGAAGCTCGTGGTCACTTAGCTAGAACAAAAGATGCTCTTGTTGCTCAGGGTGCCACAGGCTTTTGTAGCTGCTCCTCAGGAAACAGCACAGGTGTCAGAGTCAGAGGCCTTGGAGCTGAGAGCACACTTGCACTTACTATGCAACAGCATCCGAGAAAACAGAAAACGCTGCTGCCCTTCTGTCTTGACCCATGGAGGGTGCAAGCATTTTAAATCAACAAGGCTTCCTGGGGAACTGGATTACTGAAGCCAACCAATGACAAGATAGCCAGTAATGACCACTGTAATGACCTGATGGCTGGCTCTCCCACATCTGGCCCAGGGAATGGCTTTCTAGTTGGAACTTGCTTTGAGCAGAGACAAGACCATGGACATTCTGCAATAGAGGCTTTATAAGCACCTTAAACTAACTTACCATAAAAACAAGGACAGAAAGCAAGGTCTACCTCTCTACATCTGGTCCCCCTCCGCCCCAGGGGAGCCTCTTCTCAAATGCCTGTCTCCTTTCAG
Seq C2 exon
TACTGCCGAAACCCAGATGGGGATGTGAATGGTCCTTGGTGCTATACAACAAACCCCAGAAAACTTTATGACTATTGTGACATCCCCCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481:ENSMUST00000014578:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCATGTATGGGAATGGCA
R:
CACACAGGGGGATGTCACAAT
Band lengths:
243-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types