HsaINT0127554 @ hg38
Intron Retention
Gene
ENSG00000122194 | PLG
Description
plasminogen [Source:HGNC Symbol;Acc:HGNC:9071]
Coordinates
chr6:160731745-160734088:+
Coord C1 exon
chr6:160731745-160731893
Coord A exon
chr6:160731894-160733994
Coord C2 exon
chr6:160733995-160734088
Length
2101 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ACATGCCTTCTTGTTTTCAGTAC
3' ss Score
7.81
Exon sequences
Seq C1 exon
ACTGTATGTTTGGGAATGGGAAAGGATACCGAGGCAAGAGGGCGACCACTGTTACTGGGACGCCATGCCAGGACTGGGCTGCCCAGGAGCCCCATAGACACAGCATTTTCACTCCAGAGACAAATCCACGGGCGGGTCTGGAAAAAAAT
Seq A exon
GTAAGCCACTTTGATTTGGACTCTTTGGCCTTTTGCTCACCAATCTTTGCAAACAGAATTGGTTCTGTGTTACAGAAAATCTGACCTGGACTGCTCTTTTTTGTAATGGGGGAGAGGGGACAGAAGAAAATATTGGAAAGGCATCAGGGGGCTAAGCTAGAATATAATTGGCCTTAGTATGGAAAGTACAAGCAGCACAGGCCAGGAAACCTCCACACATGTGAGGGTTCTCAGGCCTCTTCCCTTTAGTGACATTTCTTTAAAGTTTCCATTATTGGGGACTGTCTCTAGTTTCTAGTGTTTGTATGCTAGGTTCCAGTAATCAAAGATGCCCTTTATGAAATTTAAGTCAGATTTTTCGAGAAAAAATTTGGATGGGCCATCAGGTCACCATGGGACTTCCCTTAGCCTCATGCATTCTCTGCGATGGTTTACTTTGGGGCCTATGAATAGGGAAGACTGAGATATAGGAAAAACCAAAGTGTCTGTGTTCCCCCACTCTCACACCCATGCAGCATAACACTTCTCACACCAGATGTGGGGGGATTTCTCCTCACACCCCAAGCGAGTCTCCAGCAGATACCAGCTGGGTGTCCTACAATGTAACTCAGTGCTGACACTCTATCTGGAGACAGTGTCAGATCCCATAAGTTAAGGCTCAGTCCCACAAGACCGCCCCACTGCAGATGCCAATCCCAAGTTCCAGGCGGTGACCTGTACTTCTGCCCAACTGGACAAAAATCTGTTTTTCTACTTGATTACTTTGCTAGAGTGGCTCACAGAACTCAGGGGAACACGTTACTTTTATTTACCCATTTGTTATAAAAGATATTACAAAGGATCCTGGTGAACAGCCAGACAGAAGAGATGCACGGGGCAAGGCATGTGAGAAGGGGCTCAGAGTTTCCATGCCCTCTCCAGTGCACCAGCCCCCGGTACCCCAAGTGTTCAGCAACCCAGAAGCTCTCCAAGTGCAGTCTTGCTGGGTTTTTATGGAGGCTTCATTACAGAGGCACAGTTGAATACATCGTTGGCCATTGGAGACCAGCTCACCTTCAGCTCCTGTTCCCTCCCTGGAAGTTGGACGTGGGGGGCTGAACAGTTCCAACCCTGCAATCACATGGTTGGTTCCTTTGGCAACCAGCCCCATCCTGAGACTATCCAAGAACCCACCAAGAGTTGCTTCATTCAAACAAAAGATGCTCCCTTCACTCAGGAACCCCCAAGGGATTTAGGAGCTCCGTGTCAGGAACTGGGGGGCAGAGACCAAATATACGTTTCTTATTCTACCACAGTGTCATATGAAGGGGAGGACAACACTGCCTTTCTGTGTCTTGCCCCATAGAGGGCGCACAATGCATGGAAATAAATGTTTCTGAATCAACAGCAAACAGGCTTCATCGGGTAGGAGAGCGCTGAGCCCTCCAGGGACAATGCACATCAATGATGTCCCACTGTCCTTTGGTGCTGGGGCTCTAAGGCCTCCACTGGGTCAGGCTCCTGAAGGGAGACCCATTCTCCAAAGACCCCCGAGGGTCACCACTCCCTGTCCAGGGGTGTGGCCTCATAGCTCCTTTTGAACAGGGGCACAGGAAGGACGGCTTTAGAGCATTCAAAAAATAACTTTGCCAAAATAATAATAATAATAATAGAAAGGAAGAAGAGGCTGAGCATGGTGGCTCACACCTGTAATCCCTACACTTTGGGAGGCTGAGACAAGCAGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAAAATGGTGAAACCTCATCTCTACTGAAAATAGAAAAAAAAATTAGCCAGGTGTGGTGGCGTGCACCTGCAGTTGCAGCTACTCAGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCGACAAGAGCAAAACTCCACCTCAGAAAAAAAAAAAAAAAAAAAAAAGAAGGAAGGAAAAAGAAACACTCCTTTATGTCTTCTAAGGATAGACATGAAATGCGTGAGCCTTGGAACACCTTCTCCCTCTCCTGCCCCACGTGAGCTGGAGCTTACATGCCTTCTTGTTTTCAG
Seq C2 exon
TACTGCCGTAACCCTGATGGTGATGTAGGTGGTCCCTGGTGCTACACGACAAATCCAAGAAAACTTTACGACTACTGTGATGTCCCTCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122194:ENST00000308192:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development