GgaINT0079297 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89827663-89829766:+
Coord C1 exon
chr3:89827663-89829575
Coord A exon
chr3:89829576-89829638
Coord C2 exon
chr3:89829639-89829766
Length
63 bp
Sequences
Splice sites
5' ss Seq
GAAGGAAGA
5' ss Score
-1.22
3' ss Seq
AATGATAAAACCTTATACAGTTC
3' ss Score
2.19
Exon sequences
Seq C1 exon
GTGCATAAAGTCATTGCTGGTATCATTGACCAAACAACTGGAGAAGTCCATTCCATTTTTCAGTCTATTCTAAAAGGTTTTATTGACTATGACACTGGAGTTAGGTTGCTCGAGAATCAGCTGGTCCTTACTGGAATTATTTCTCCAGAATTAGGAATATGTTATGATTTGGAAGAAGCTAAAGCTTGTGCCCTAGTTGATGAGCAGACTGTATTGCAGTTGCAAGAATTAAATAGTGCGAAGAAGCTTATTTCAGAGTCAACATTATCAAATCTTCCAGTTGTATCAGCTTTAGAACAAGGTCTAATTTCAGAACCTTTGGCTATTAAAATTCTTGAGATTCAGCTTTCAAGTGGGCACTTGATTTTGCCATCTACGGGAGAGCACCTGACTTTGCAGAATGCTTTCCAGAGAAACCTGATTTCTCCAACATTATATGCAAAGCTTCTGGAAAGGCAAGACACTTGTAAAGATCTCATAGACCCTAACTGTGCTGAAAAGATTTCCCTTGAACAGATGCTTCATAGAAGCATAATACATGACAAAACAGGGTTAAGACTCCTATCAGTGAAACCTCAAGAAAAAGGTAGAATCATACTCAAATGTGGAAGGAAAATAACTATATTGAGGGCAGCCCATGAAGGACTCATTGACAGGGAAACAATGTTTAGGCTGCTGGGGGCTCAGATAATATCTGGAGGTATAATTGACCCTGAGTCAGGGAAGCGAATGACTGTGGAAGAGGCTGTGAGTCAAGGGATTATAGGTCAGGACACTGCTTGTGGGATCTTCACACATCAGGTTCAAACTGGTGGAATCCTTTGTCCAAATTCTGGGCAACGCTTGACTGTTGATGAAGCCATACAATGCAATTTAATATCATCTACCAGTGCACTGCTGGTGTTAGAAGCACAGAGAGGCTTTGTTGGACTAATATGGCCTGACACAGGTGAAATATTCCCCATATCAACATCTTTGCACCAAGAAATGATAACAAATGAGCTGGCATTCAAAATACTTAGTGATAGGCAGAAAATAGCTGCACTTTACATTCCAGAAACTTGTGAAGTACTCAGTCTAGACAGGGCTGCACAATCAGGGTTAATAGACATCAATACTGTATCTGTTCTGAACAGTGTGACTTTACCAGATAAAATGCCCAATGTAGAAGAATTAGAATCCCCTTGCAAAAATGCTGCAAAGTGGTTATCTTCATATGAAGTCCTGACATCTTTATTTCATGACTGTGAAGAGGACCGTGAGGATTCTGGCACAGAAGACCCTGCATGTCATAATTCAGACCAAGCTAAGAAATTGTTCATATCTTATCTGATGGTAAATAGTTATATGGATGCAAACACTGGAGGAAGACTTCTGTTATATGATGGACAATTGCAGGAAGCCATCAGTATGTTTCTGGAAGGGGATAGTTCTGCATACGGTAGTGATGTGTCAGAAATGGCTTTCAGCAACAAATACATAAATCTGAAAGGAATTAATCTAAAGTCAGCTGGCAATGTCCACTTGAGTAATATTACAGGCAGTGCTCAAGGTGGTCCTTCAGGTGCTGAAATTACTTCTGATGACAAGAAGTTAATTCAGTTTGAAGATTTGGGGAATTATACATGTTCCCAGAGAAAAGATATATGTAGATCAGATGTTTGCAGTGATAGTGGTACTGAACAATCACAGTTTACACTGGAGATGCTGTTAAGTAAACCTGCAGAACTTAAAAATGTAGAAATTAACACTCAAAATTTCGAGAACAGAAATACACTCGAGGGTCTTCTGGAGGATTCTGAGTGGACACCATTAGAGGTGTATGGGCATAATGATCAGAAAGCAAATTCAGGAAACACTGAAGGAGTTTTTCCAAATGACTCAAATCCAAATCTTATGTCAGGTAGAGAGAA
Seq A exon
GGAAGAGGTTGTTACGACAGGTAATCTGGGTAAGGAAAACAGGAATGATAAAACCTTATACAG
Seq C2 exon
TTCCTTGAGTGTGAATGACTTGTCGGATAATGAAATCTGGGGAGACCTGGAAAAGACCTGCATGAAATACGAGCCTCATGTATTGCAAGCTGACAGTTACAGAATGGCACTGAGTAATGTTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.341
Domain overlap (PFAM):
C1:
PF0068115=Plectin=PD(95.1=6.1),PF0068115=Plectin=WD(100=7.1),PF0068115=Plectin=WD(100=7.1),PF0068115=Plectin=WD(100=6.1),PF0068115=Plectin=WD(100=6.3),PF0068115=Plectin=WD(100=7.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATTCTGAGTGGACACC
R:
CGACAAGTCATTCACACTCAAGGA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]