GgaEX1021123 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89826473-89837595:+
Coord C1 exon
chr3:89826473-89826608
Coord A exon
chr3:89833440-89833586
Coord C2 exon
chr3:89837443-89837595
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGTTAAAACCCATTTTCAGGTT
3' ss Score
8.16
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AATGACAGATGAAGAGAGAGGTGAAATGGAAAAACAAGTCAAATCCCTCCAGGAGAGCTACAGTTTGTTATCCCATGAAGCTTTGAAGCAGCTGCAGGAAGCACAGTATTTGGATGATGAAAAGATGGAAGAAAAG
Seq A exon
GTTGATGGAGAACAGGGATGTTTAAAGTTAAGAGAGAAAATGCAAGAGCATTTGGCAGTGCTTCAGGAGGTGAAAAGACACCTAGAAAACCAGAAACCTATTAGTAGCAACCTGGAAATACTAAAAGAACAATTAGAACAACTAGAG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'39-48,'39-44,46-48=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0068115=Plectin=PU(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCAGGAGAGCTACAGTT
R:
CTCCTGTTTGGTCTGGTATTGT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]