GgaEX0024009 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89834168-89837595:+
Coord C1 exon
chr3:89834168-89834314
Coord A exon
chr3:89835361-89835594
Coord C2 exon
chr3:89837443-89837595
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGTCTTTACTTACAGAAC
3' ss Score
10.41
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TCTAAGCTTGCAGAATTGCACCAGCAACTTTTAAGCAAACTCCAGACATTTTCAGACTGGATCACAGGACACAATAAAATCATAAATGACTTCAAAGTGAATACTGATGACATAGAAGATATGAAGCAAAGTTTAAAGCTACTCAAA
Seq A exon
AACACCGCTGCAGAGGTTGCTCGTACAAAAATGCAACTGGAGTCCACTGCATTTGATGTTCAGTTCTTCATTTCTGAACATGCCCAGGATCTTTCTCCTAATCAGAGCAAACAGCTTCTGAGGCTCTTAAATACCATTCAGAAATCTTTTCAGGAAGTGCAGGAAACTGTAACATCTCAAGTGGAGAGTTTAGAGACTCAGTTACAGGCAGCGCAAGAGCTGGGTGATCAGAAG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'48-48,'48-47,49-48
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.090 C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGCAACTTTTAAGCAA
R:
CTCCTGTTTGGTCTGGTATTGT
Band lengths:
283-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]